Mock Version: 4.0
Mock Version: 4.0
Mock Version: 4.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'], chrootPath='/var/lib/mock/f39-python-43516244-5227553/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff8efb9b90>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cb20566dde56406b9c106f9ce40aa376', '-D', '/var/lib/mock/f39-python-43516244-5227553/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1686873600
Wrote: /builddir/build/SRPMS/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'], chrootPath='/var/lib/mock/f39-python-43516244-5227553/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff8efb9b90>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3212c69cd1d7481e924b89c34bac0474', '-D', '/var/lib/mock/f39-python-43516244-5227553/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1686873600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rdfYQ6
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
+ /usr/bin/mkdir -p SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find Scripts -type f -exec chmod -x '{}' ';'
+ find Doc -type f -exec chmod -x '{}' ';'
+ find Doc -type f -exec sed -i 's/\r//' '{}' ';'
+ find Bio -type f -exec chmod -x '{}' ';'
+ find Bio -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LyrU0x
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
running build
running build_py
creating build
creating build/lib.linux-aarch64-cpython-312
creating build/lib.linux-aarch64-cpython-312/Bio
copying Bio/File.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/LogisticRegression.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/MarkovModel.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/MaxEntropy.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/NaiveBayes.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/Seq.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/SeqFeature.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/SeqRecord.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/bgzf.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/kNN.py -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/pairwise2.py -> build/lib.linux-aarch64-cpython-312/Bio
creating build/lib.linux-aarch64-cpython-312/Bio/Affy
copying Bio/Affy/CelFile.py -> build/lib.linux-aarch64-cpython-312/Bio/Affy
copying Bio/Affy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Affy
creating build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/AlignInfo.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/a2m.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/bed.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/bigbed.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/bigmaf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/bigpsl.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/clustal.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/emboss.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/exonerate.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/fasta.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/hhr.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/maf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/mauve.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/msf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/nexus.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/phylip.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/psl.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/sam.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/stockholm.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
copying Bio/Align/tabular.py -> build/lib.linux-aarch64-cpython-312/Bio/Align
creating build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications
creating build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices
copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices
creating build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/MafIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/MauveIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/MsfIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO
creating build/lib.linux-aarch64-cpython-312/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Alphabet
creating build/lib.linux-aarch64-cpython-312/Bio/Application
copying Bio/Application/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Application
creating build/lib.linux-aarch64-cpython-312/Bio/Blast
copying Bio/Blast/Applications.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast
copying Bio/Blast/NCBIXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast
copying Bio/Blast/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast
copying Bio/Blast/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast
creating build/lib.linux-aarch64-cpython-312/Bio/CAPS
copying Bio/CAPS/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/CAPS
creating build/lib.linux-aarch64-cpython-312/Bio/Cluster
copying Bio/Cluster/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Cluster
creating build/lib.linux-aarch64-cpython-312/Bio/codonalign
copying Bio/codonalign/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign
copying Bio/codonalign/codonalignment.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign
copying Bio/codonalign/codonseq.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign
creating build/lib.linux-aarch64-cpython-312/Bio/Compass
copying Bio/Compass/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Compass
creating build/lib.linux-aarch64-cpython-312/Bio/Data
copying Bio/Data/CodonTable.py -> build/lib.linux-aarch64-cpython-312/Bio/Data
copying Bio/Data/IUPACData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data
copying Bio/Data/PDBData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data
copying Bio/Data/SCOPData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data
copying Bio/Data/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Data
creating build/lib.linux-aarch64-cpython-312/Bio/Emboss
copying Bio/Emboss/Applications.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss
copying Bio/Emboss/Primer3.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss
copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss
copying Bio/Emboss/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss
creating build/lib.linux-aarch64-cpython-312/Bio/Entrez
copying Bio/Entrez/Parser.py -> build/lib.linux-aarch64-cpython-312/Bio/Entrez
copying Bio/Entrez/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Entrez
creating build/lib.linux-aarch64-cpython-312/Bio/ExPASy
copying Bio/ExPASy/Enzyme.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy
copying Bio/ExPASy/Prodoc.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy
copying Bio/ExPASy/Prosite.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy
copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy
copying Bio/ExPASy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy
copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy
creating build/lib.linux-aarch64-cpython-312/Bio/GenBank
copying Bio/GenBank/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank
copying Bio/GenBank/Scanner.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank
copying Bio/GenBank/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank
copying Bio/GenBank/utils.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank
creating build/lib.linux-aarch64-cpython-312/Bio/Geo
copying Bio/Geo/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/Geo
copying Bio/Geo/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Geo
creating build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/Comparative.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/Distribution.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/KGML_vis.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
copying Bio/Graphics/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics
creating build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram
creating build/lib.linux-aarch64-cpython-312/Bio/HMM
copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM
copying Bio/HMM/MarkovModel.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM
copying Bio/HMM/Trainer.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM
copying Bio/HMM/Utilities.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM
copying Bio/HMM/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM
creating build/lib.linux-aarch64-cpython-312/Bio/KEGG
copying Bio/KEGG/REST.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG
copying Bio/KEGG/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG
creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound
copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound
creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme
copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme
creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene
copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene
creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map
copying Bio/KEGG/Map/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map
creating build/lib.linux-aarch64-cpython-312/Bio/PDB
creating build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf
copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf
copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf
copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf
creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML
copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML
copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML
copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML
creating build/lib.linux-aarch64-cpython-312/Bio/Medline
copying Bio/Medline/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Medline
creating build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/alignace.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/clusterbuster.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/mast.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/matrix.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/meme.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/minimal.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/pfm.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/thresholds.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/transfac.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/motifs/xms.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs
creating build/lib.linux-aarch64-cpython-312/Bio/motifs/applications
copying Bio/motifs/applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/applications
copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/applications
creating build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar
copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar
copying Bio/motifs/jaspar/db.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar
creating build/lib.linux-aarch64-cpython-312/Bio/Nexus
copying Bio/Nexus/Nexus.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus
copying Bio/Nexus/Nodes.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus
copying Bio/Nexus/StandardData.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus
copying Bio/Nexus/Trees.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus
copying Bio/Nexus/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus
creating build/lib.linux-aarch64-cpython-312/Bio/NMR
copying Bio/NMR/NOEtools.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR
copying Bio/NMR/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR
copying Bio/NMR/xpktools.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR
creating build/lib.linux-aarch64-cpython-312/Bio/Pathway
copying Bio/Pathway/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway
creating build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep
copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep
copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep
copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep
copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Atom.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Chain.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/DSSP.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Dice.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Entity.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/FragmentMapper.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/HSExposure.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/MMCIFParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Model.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/NACCESS.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/NeighborSearch.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/PDBExceptions.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/PDBIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/PDBList.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/PDBParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/PICIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/PSEA.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Polypeptide.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Residue.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/ResidueDepth.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/SASA.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/SCADIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Selection.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Structure.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/StructureAlignment.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/StructureBuilder.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/Superimposer.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/cealign.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/ic_data.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/ic_rebuild.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/internal_coords.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/mmcifio.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/qcprot.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/vectors.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB
creating build/lib.linux-aarch64-cpython-312/Bio/phenotype
copying Bio/phenotype/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype
copying Bio/phenotype/phen_micro.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype
copying Bio/phenotype/pm_fitting.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype
creating build/lib.linux-aarch64-cpython-312/Bio/PopGen
copying Bio/PopGen/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen
creating build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop
creating build/lib.linux-aarch64-cpython-312/Bio/Restriction
copying Bio/Restriction/PrintFormat.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction
copying Bio/Restriction/Restriction.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction
copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction
copying Bio/Restriction/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction
creating build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/Cla.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/Des.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/Dom.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/Hie.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/Raf.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/Residues.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
copying Bio/SCOP/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO
copying Bio/SearchIO/BlatIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO
copying Bio/SearchIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO
copying Bio/SearchIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO
copying Bio/SearchIO/_index.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO
copying Bio/SearchIO/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy
copying Bio/SearchIO/_legacy/NCBIStandalone.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy
copying Bio/SearchIO/_legacy/ParserSupport.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy
copying Bio/SearchIO/_legacy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model
copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model
copying Bio/SearchIO/_model/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model
copying Bio/SearchIO/_model/hit.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model
copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model
copying Bio/SearchIO/_model/query.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/blast_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO
copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO
copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO
creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO
copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO
copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO
creating build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/AbiIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/AceIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/GckIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/IgIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/Interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/NibIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/PdbIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/PhdIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/PirIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/QualityIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/SffIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/SwissIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/TabIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/SeqIO/_index.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
creating build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
copying Bio/SeqUtils/lcc.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils
creating build/lib.linux-aarch64-cpython-312/Bio/Sequencing
copying Bio/Sequencing/Ace.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing
copying Bio/Sequencing/Phd.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing
copying Bio/Sequencing/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing
creating build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications
copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications
copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications
copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications
copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications
creating build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer
copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer
creating build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer
copying Bio/PDB/QCPSuperimposer/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer
creating build/lib.linux-aarch64-cpython-312/Bio/SwissProt
copying Bio/SwissProt/KeyWList.py -> build/lib.linux-aarch64-cpython-312/Bio/SwissProt
copying Bio/SwissProt/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SwissProt
creating build/lib.linux-aarch64-cpython-312/Bio/TogoWS
copying Bio/TogoWS/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/TogoWS
creating build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/BaseTree.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/CDAO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/CDAOIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/Consensus.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/NeXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/Newick.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/NewickIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/NexusIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/PhyloXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/_io.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
copying Bio/Phylo/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo
creating build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications
copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications
copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications
copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications
copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications
creating build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML
creating build/lib.linux-aarch64-cpython-312/Bio/UniGene
copying Bio/UniGene/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/UniGene
creating build/lib.linux-aarch64-cpython-312/Bio/UniProt
copying Bio/UniProt/GOA.py -> build/lib.linux-aarch64-cpython-312/Bio/UniProt
copying Bio/UniProt/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/UniProt
creating build/lib.linux-aarch64-cpython-312/Bio/Wise
copying Bio/Wise/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Wise
copying Bio/Wise/dnal.py -> build/lib.linux-aarch64-cpython-312/Bio/Wise
copying Bio/Wise/psw.py -> build/lib.linux-aarch64-cpython-312/Bio/Wise
creating build/lib.linux-aarch64-cpython-312/BioSQL
copying BioSQL/BioSeq.py -> build/lib.linux-aarch64-cpython-312/BioSQL
copying BioSQL/BioSeqDatabase.py -> build/lib.linux-aarch64-cpython-312/BioSQL
copying BioSQL/DBUtils.py -> build/lib.linux-aarch64-cpython-312/BioSQL
copying BioSQL/Loader.py -> build/lib.linux-aarch64-cpython-312/BioSQL
copying BioSQL/__init__.py -> build/lib.linux-aarch64-cpython-312/BioSQL
running egg_info
creating biopython.egg-info
writing biopython.egg-info/PKG-INFO
writing dependency_links to biopython.egg-info/dependency_links.txt
writing requirements to biopython.egg-info/requires.txt
writing top-level names to biopython.egg-info/top_level.txt
writing manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.py{}' found anywhere in distribution
warning: no previously-included files matching '*.py-e' found anywhere in distribution
adding license file 'LICENSE'
adding license file 'LICENSE.rst'
writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
!!
        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.
        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
        to the `packages` configuration field.
        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).
        You can read more about "package discovery" on setuptools documentation page:
        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
        If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.
        You can read more about "package data files" on setuptools documentation page:
        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************
!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
!!
        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.
        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
        to the `packages` configuration field.
        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).
        You can read more about "package discovery" on setuptools documentation page:
        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
        If you don't want 'Bio.Entrez.DTDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.DTDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.
        You can read more about "package data files" on setuptools documentation page:
        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************
!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
!!
        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.
        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
        to the `packages` configuration field.
        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).
        You can read more about "package discovery" on setuptools documentation page:
        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
        If you don't want 'Bio.Entrez.XSDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.XSDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.
        You can read more about "package data files" on setuptools documentation page:
        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************
!!
  check.warn(importable)
copying Bio/cpairwise2module.c -> build/lib.linux-aarch64-cpython-312/Bio
copying Bio/Align/_aligners.c -> build/lib.linux-aarch64-cpython-312/Bio/Align
creating build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data
copying Bio/Cluster/cluster.c -> build/lib.linux-aarch64-cpython-312/Bio/Cluster
copying Bio/Cluster/cluster.h -> build/lib.linux-aarch64-cpython-312/Bio/Cluster
copying Bio/Cluster/clustermodule.c -> build/lib.linux-aarch64-cpython-312/Bio/Cluster
creating build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
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copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs
creating build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs
copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs
copying Bio/motifs/_pwm.c -> build/lib.linux-aarch64-cpython-312/Bio/motifs
copying Bio/Nexus/cnexus.c -> build/lib.linux-aarch64-cpython-312/Bio/Nexus
copying Bio/PDB/ccealignmodule.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/PDB/kdtrees.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB
copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO
copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer
running build_ext
building 'Bio.Align._aligners' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/Bio
creating build/temp.linux-aarch64-cpython-312/Bio/Align
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligners.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_aligners.o
Bio/Align/_aligners.c: In function ‘Aligner_watermansmithbeyer_global_align_compare’:
Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
Bio/Align/_aligners.c: In function ‘Aligner_watermansmithbeyer_local_align_compare’:
Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
In function ‘Aligner_watermansmithbeyer_global_align_matrix’,
    inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6872:34:
Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_aligners.c: In function ‘Aligner_align’:
Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
In function ‘Aligner_watermansmithbeyer_global_align_matrix’,
    inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6872:34:
Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_aligners.c: In function ‘Aligner_align’:
Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
In function ‘Aligner_watermansmithbeyer_local_align_matrix’,
    inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6878:34:
Bio/Align/_aligners.c:5737:16: warning: ‘Iy_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_aligners.c: In function ‘Aligner_align’:
Bio/Align/_aligners.c:5406:14: note: ‘Iy_row’ was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
In function ‘Aligner_watermansmithbeyer_local_align_matrix’,
    inlined from ‘Aligner_align’ at Bio/Align/_aligners.c:6878:34:
Bio/Align/_aligners.c:5735:12: warning: ‘Ix_row’ may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_aligners.c: In function ‘Aligner_align’:
Bio/Align/_aligners.c:5405:14: note: ‘Ix_row’ was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/Align/_aligners.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so
building 'Bio.cpairwise2' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o
Bio/cpairwise2module.c: In function ‘_get_match_score’:
Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations]
   60 |     if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
      |     ^~
In file included from /usr/include/python3.12/Python.h:95,
                 from Bio/cpairwise2module.c:16:
/usr/include/python3.12/ceval.h:27:43: note: declared here
   27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords(
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-aarch64-cpython-312/Bio/Nexus
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so
building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension
creating build/temp.linux-aarch64-cpython-312/Bio/PDB
creating build/temp.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-aarch64-cpython-312/Bio/motifs
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so
building 'Bio.Cluster._cluster' extension
creating build/temp.linux-aarch64-cpython-312/Bio/Cluster
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so
building 'Bio.PDB.kdtrees' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so
building 'Bio.PDB.ccealign' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so
building 'Bio.SeqIO._twoBitIO' extension
creating build/temp.linux-aarch64-cpython-312/Bio/SeqIO
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Ylo1Bs
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64
++ dirname /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64 --prefix /usr --install-data=/usr/share/python-biopython
running install
/usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer, pypa/build or
        other standards-based tools.
        Follow the current Python packaging guidelines when building
        Python RPM packages.
        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
        and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
        ********************************************************************************
!!
  self.initialize_options()
running install_lib
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/File.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/LogisticRegression.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/MarkovModel.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/MaxEntropy.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/NaiveBayes.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/Seq.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/SeqFeature.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/SeqRecord.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/bgzf.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/kNN.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/pairwise2.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Affy
copying build/lib.linux-aarch64-cpython-312/Bio/Affy/CelFile.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Affy
copying build/lib.linux-aarch64-cpython-312/Bio/Affy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Affy
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/AlignInfo.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/a2m.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/bed.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigbed.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigmaf.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigpsl.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/clustal.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/emboss.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/exonerate.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/fasta.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/hhr.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/maf.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/mauve.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/msf.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/nexus.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/phylip.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/psl.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/sam.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/stockholm.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/tabular.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Clustalw.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Dialign.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Mafft.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Muscle.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Prank.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Probcons.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_TCoffee.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/STR -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/data
copying build/lib.linux-aarch64-cpython-312/Bio/Align/_aligners.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
copying build/lib.linux-aarch64-cpython-312/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/ClustalIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/EmbossIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/Interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MafIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MauveIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MsfIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/NexusIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/PhylipIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/StockholmIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-cpython-312/Bio/Alphabet/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Alphabet
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Application
copying build/lib.linux-aarch64-cpython-312/Bio/Application/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Application
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
copying build/lib.linux-aarch64-cpython-312/Bio/Blast/Applications.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
copying build/lib.linux-aarch64-cpython-312/Bio/Blast/NCBIWWW.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
copying build/lib.linux-aarch64-cpython-312/Bio/Blast/NCBIXML.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
copying build/lib.linux-aarch64-cpython-312/Bio/Blast/ParseBlastTable.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
copying build/lib.linux-aarch64-cpython-312/Bio/Blast/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
copying build/lib.linux-aarch64-cpython-312/Bio/Blast/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/CAPS
copying build/lib.linux-aarch64-cpython-312/Bio/CAPS/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/CAPS
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/cluster.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/cluster.h -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/codonalignment.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/codonseq.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Compass
copying build/lib.linux-aarch64-cpython-312/Bio/Compass/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Compass
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data
copying build/lib.linux-aarch64-cpython-312/Bio/Data/CodonTable.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data
copying build/lib.linux-aarch64-cpython-312/Bio/Data/IUPACData.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data
copying build/lib.linux-aarch64-cpython-312/Bio/Data/PDBData.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data
copying build/lib.linux-aarch64-cpython-312/Bio/Data/SCOPData.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data
copying build/lib.linux-aarch64-cpython-312/Bio/Data/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/Applications.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/Primer3.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/PrimerSearch.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/Parser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
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copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
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copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
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copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
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copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/format.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/link.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/list.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/math.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/modules.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
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copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/notat.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/para.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/references.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/section.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/DTDs
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/XSDs
copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/XSDs
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Enzyme.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Prodoc.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Prosite.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/ScanProsite.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/cellosaurus.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/Scanner.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/utils.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Geo
copying build/lib.linux-aarch64-cpython-312/Bio/Geo/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Geo
copying build/lib.linux-aarch64-cpython-312/Bio/Geo/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Geo
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/BasicChromosome.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/ColorSpiral.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/Comparative.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/Distribution.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/KGML_vis.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM
copying build/lib.linux-aarch64-cpython-312/Bio/HMM/DynamicProgramming.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM
copying build/lib.linux-aarch64-cpython-312/Bio/HMM/MarkovModel.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM
copying build/lib.linux-aarch64-cpython-312/Bio/HMM/Trainer.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM
copying build/lib.linux-aarch64-cpython-312/Bio/HMM/Utilities.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM
copying build/lib.linux-aarch64-cpython-312/Bio/HMM/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/REST.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Compound
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Compound
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Enzyme
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Enzyme
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Gene
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Gene
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Map
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Map
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/KGML
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Atom.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Chain.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/DSSP.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Dice.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Entity.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/FragmentMapper.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/HSExposure.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/MMCIF2Dict.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/MMCIFParser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Model.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/NACCESS.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/NeighborSearch.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBExceptions.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBList.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBParser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PICIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PSEA.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Polypeptide.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Residue.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ResidueDepth.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/SASA.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/SCADIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Selection.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Structure.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/StructureAlignment.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/StructureBuilder.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Superimposer.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/cealign.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ic_data.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ic_rebuild.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/internal_coords.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmcifio.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/parse_pdb_header.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/qcprot.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/vectors.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Medline
copying build/lib.linux-aarch64-cpython-312/Bio/Medline/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Medline
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/alignace.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/clusterbuster.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/mast.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/matrix.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/meme.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/minimal.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/pfm.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/thresholds.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/transfac.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/xms.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/applications
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/applications
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/applications/_xxmotif.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/applications
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar/db.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
copying build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Nexus.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Nodes.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/StandardData.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Trees.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/NMR
copying build/lib.linux-aarch64-cpython-312/Bio/NMR/NOEtools.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/NMR
copying build/lib.linux-aarch64-cpython-312/Bio/NMR/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/NMR
copying build/lib.linux-aarch64-cpython-312/Bio/NMR/xpktools.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/NMR
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway
copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/Graph.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway/Rep
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/phen_micro.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/pm_fitting.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/phenotype
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen
copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/Controller.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/PrintFormat.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/Restriction.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Cla.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Des.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Dom.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Hie.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Raf.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Residues.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlatIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_index.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_legacy
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy/NCBIStandalone.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_legacy
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy/ParserSupport.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_legacy
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_legacy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_legacy
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/hit.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/hsp.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/query.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_text.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HHsuiteIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HHsuiteIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HHsuiteIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/InterproscanIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/InterproscanIO
copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/InterproscanIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/AbiIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/AceIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/GckIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/IgIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/InsdcIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/Interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/NibIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PdbIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PhdIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PirIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/QualityIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SffIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SwissIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/TabIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/TwoBitIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/UniprotIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/XdnaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_index.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/CheckSum.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/CodonUsage.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/CodonUsageIndices.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/ProtParam.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/ProtParamData.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/lcc.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Ace.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Phd.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Applications
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SVDSuperimposer
copying build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SVDSuperimposer
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SwissProt
copying build/lib.linux-aarch64-cpython-312/Bio/SwissProt/KeyWList.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SwissProt
copying build/lib.linux-aarch64-cpython-312/Bio/SwissProt/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SwissProt
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/TogoWS
copying build/lib.linux-aarch64-cpython-312/Bio/TogoWS/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/TogoWS
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/BaseTree.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/CDAO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/CDAOIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Consensus.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NeXML.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NeXMLIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Newick.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NewickIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NexusIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PhyloXML.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/TreeConstruction.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_cdao_owl.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_io.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_paml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/baseml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/chi2.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/codeml.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/yn00.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniGene
copying build/lib.linux-aarch64-cpython-312/Bio/UniGene/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniGene
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniProt
copying build/lib.linux-aarch64-cpython-312/Bio/UniProt/GOA.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniProt
copying build/lib.linux-aarch64-cpython-312/Bio/UniProt/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniProt
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise
copying build/lib.linux-aarch64-cpython-312/Bio/Wise/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise
copying build/lib.linux-aarch64-cpython-312/Bio/Wise/dnal.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise
copying build/lib.linux-aarch64-cpython-312/Bio/Wise/psw.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise
copying build/lib.linux-aarch64-cpython-312/Bio/cpairwise2module.c -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
copying build/lib.linux-aarch64-cpython-312/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL
copying build/lib.linux-aarch64-cpython-312/BioSQL/BioSeq.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL
copying build/lib.linux-aarch64-cpython-312/BioSQL/BioSeqDatabase.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL
copying build/lib.linux-aarch64-cpython-312/BioSQL/DBUtils.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL
copying build/lib.linux-aarch64-cpython-312/BioSQL/Loader.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL
copying build/lib.linux-aarch64-cpython-312/BioSQL/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/File.py to File.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/MarkovModel.py to MarkovModel.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Seq.py to Seq.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqFeature.py to SeqFeature.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqRecord.py to SeqRecord.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/_utils.py to _utils.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/bgzf.py to bgzf.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/kNN.py to kNN.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/pairwise2.py to pairwise2.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Affy/CelFile.py to CelFile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Affy/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/a2m.py to a2m.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/bed.py to bed.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/bigbed.py to bigbed.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/bigmaf.py to bigmaf.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/bigpsl.py to bigpsl.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/clustal.py to clustal.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/emboss.py to emboss.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/exonerate.py to exonerate.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/fasta.py to fasta.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/hhr.py to hhr.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/interfaces.py to interfaces.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/maf.py to maf.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/mauve.py to mauve.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/msf.py to msf.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/nexus.py to nexus.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/phylip.py to phylip.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/psl.py to psl.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/sam.py to sam.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/stockholm.py to stockholm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/tabular.py to tabular.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/Applications/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/AlignIO/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Alphabet/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Application/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast/Applications.py to Applications.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast/Record.py to Record.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Blast/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/CAPS/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/codonalign/codonseq.py to codonseq.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Compass/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data/CodonTable.py to CodonTable.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data/IUPACData.py to IUPACData.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data/PDBData.py to PDBData.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data/SCOPData.py to SCOPData.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Data/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss/Applications.py to Applications.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss/Primer3.py to Primer3.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Emboss/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/Parser.py to Parser.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank/Record.py to Record.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank/Scanner.py to Scanner.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/GenBank/utils.py to utils.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Geo/Record.py to Record.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Geo/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/Comparative.py to Comparative.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/Distribution.py to Distribution.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM/Trainer.py to Trainer.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM/Utilities.py to Utilities.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/HMM/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/REST.py to REST.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Atom.py to Atom.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Chain.py to Chain.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/DSSP.py to DSSP.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Entity.py to Entity.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Model.py to Model.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/PDBList.py to PDBList.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Residue.py to Residue.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/SASA.py to SASA.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Selection.py to Selection.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Structure.py to Structure.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/cealign.py to cealign.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/ic_data.py to ic_data.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/qcprot.py to qcprot.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/vectors.py to vectors.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Medline/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/alignace.py to alignace.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/mast.py to mast.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/matrix.py to matrix.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/meme.py to meme.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/minimal.py to minimal.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/pfm.py to pfm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/thresholds.py to thresholds.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/transfac.py to transfac.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/xms.py to xms.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/applications/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus/Nodes.py to Nodes.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus/StandardData.py to StandardData.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus/Trees.py to Trees.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/NMR/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/phenotype/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction/Restriction.py to Restriction.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Restriction/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/Cla.py to Cla.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/Des.py to Des.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/Dom.py to Dom.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/Hie.py to Hie.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/Raf.py to Raf.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/Residues.py to Residues.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SCOP/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_utils.py to _utils.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/_model/hit.py to hit.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/_index.py to _index.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqUtils/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Ace.py to Ace.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/CDAO.py to CDAO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Consensus.py to Consensus.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/NeXML.py to NeXML.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Newick.py to Newick.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/__init__.py to __init__.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/_io.py to _io.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/_utils.py to _utils.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniGene/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniProt/GOA.py to GOA.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/UniProt/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise/dnal.py to dnal.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Wise/psw.py to psw.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL/BioSeq.py to BioSeq.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL/DBUtils.py to DBUtils.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL/Loader.py to Loader.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/BioSQL/__init__.py to __init__.cpython-312.pyc
writing byte-compilation script '/tmp/tmplt9vq6it.py'
/usr/bin/python3 /tmp/tmplt9vq6it.py
removing /tmp/tmplt9vq6it.py
running install_egg_info
running egg_info
writing biopython.egg-info/PKG-INFO
writing dependency_links to biopython.egg-info/dependency_links.txt
writing requirements to biopython.egg-info/requires.txt
writing top-level names to biopython.egg-info/top_level.txt
reading manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.py{}' found anywhere in distribution
warning: no previously-included files matching '*.py-e' found anywhere in distribution
adding license file 'LICENSE'
adding license file 'LICENSE.rst'
writing manifest file 'biopython.egg-info/SOURCES.txt'
Copying biopython.egg-info to /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/biopython-1.82.dev0-py3.12.egg-info
running install_scripts
+ rm -rfv /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/bin/__pycache__
++ find Scripts -name '*.py'
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/GenBank/check_output.py
Scripts/GenBank/check_output.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/GenBank/check_output_simple.py
Scripts/GenBank/check_output_simple.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/PDB/generate_three_to_one_dict.py
Scripts/PDB/generate_three_to_one_dict.py: no change
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/PDB/hsexpo.py
Scripts/PDB/hsexpo.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/Performance/biosql_performance_load.py
Scripts/Performance/biosql_performance_load.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/Performance/biosql_performance_read.py
Scripts/Performance/biosql_performance_read.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/Restriction/ranacompiler.py
Scripts/Restriction/ranacompiler.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/Restriction/rebase_update.py
Scripts/Restriction/rebase_update.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/SeqGui/SeqGui.py
Scripts/SeqGui/SeqGui.py: no change
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/query_pubmed.py
Scripts/query_pubmed.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/scop_pdb.py
Scripts/scop_pdb.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/update_ncbi_codon_table.py
Scripts/update_ncbi_codon_table.py: no change
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/nextorf.py
Scripts/xbbtools/nextorf.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_blast.py
Scripts/xbbtools/xbb_blast.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_blastbg.py
Scripts/xbbtools/xbb_blastbg.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_help.py
Scripts/xbbtools/xbb_help.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_search.py
Scripts/xbbtools/xbb_search.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_translations.py
Scripts/xbbtools/xbb_translations.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_utils.py
Scripts/xbbtools/xbb_utils.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbb_widget.py
Scripts/xbbtools/xbb_widget.py: updating
+ for i in `find Scripts -name '*.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP Scripts/xbbtools/xbbtools.py
Scripts/xbbtools/xbbtools.py: updating
+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 1.82-0.1.20230615gitbe9f39d.fc39 --unique-debug-suffix -1.82-0.1.20230615gitbe9f39d.fc39.aarch64 --unique-debug-src-base python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Align/_aligners.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so
/usr/bin/gdb.minimal
original debug info size: 1064kB, size after compression: 996kB
/usr/bin/sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match.
1192 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12 using python3.12
Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib/debug/usr/lib64/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.sq2npR
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
~/build/BUILD/biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426/Tests ~/build/BUILD/biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
+ cd biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426
+ pushd Tests
++ find . -name run_tests.py
+ for i in `find . -name 'run_tests.py'`
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP ./run_tests.py
./run_tests.py: updating
+ find ../ -name __init__.py
+ xargs rm -f
++ grep -v Nexus
++ ls test_Ace.py test_Affy.py test_AlignIO.py test_AlignIO_ClustalIO.py test_AlignIO_EmbossIO.py test_AlignIO_FastaIO.py test_AlignIO_MauveIO.py test_AlignIO_PhylipIO.py test_AlignIO_convert.py test_AlignInfo.py test_Align_Alignment.py test_Align_a2m.py test_Align_bed.py test_Align_bigbed.py test_Align_bigmaf.py test_Align_bigpsl.py test_Align_clustal.py test_Align_emboss.py test_Align_exonerate.py test_Align_fasta.py test_Align_hhr.py test_Align_maf.py test_Align_mauve.py test_Align_msf.py test_Align_nexus.py test_Align_phylip.py test_Align_psl.py test_Align_sam.py test_Align_stockholm.py test_Align_tabular.py test_Application.py test_BWA_tool.py test_BioSQL_MySQLdb.py test_BioSQL_MySQLdb_online.py test_BioSQL_mysql_connector.py test_BioSQL_mysql_connector_online.py test_BioSQL_psycopg2.py test_BioSQL_psycopg2_online.py test_BioSQL_sqlite3.py test_BioSQL_sqlite3_online.py test_Blast_Record.py test_CAPS.py test_Chi2.py test_ClustalOmega_tool.py test_Clustalw_tool.py test_Cluster.py test_CodonTable.py test_ColorSpiral.py test_Compass.py test_Consensus.py test_Dialign_tool.py test_EMBL_unittest.py test_Emboss.py test_EmbossPhylipNew.py test_EmbossPrimer.py test_Entrez.py test_Entrez_online.py test_Entrez_parser.py test_Enzyme.py test_ExPASy.py test_Fasttree_tool.py test_File.py test_GenBank.py test_GenomeDiagram.py test_GraphicsBitmaps.py test_GraphicsChromosome.py test_GraphicsDistribution.py test_GraphicsGeneral.py test_HMMCasino.py test_HMMGeneral.py test_KEGG.py test_KEGG_online.py test_KGML_graphics.py test_KGML_graphics_online.py test_KGML_nographics.py test_KeyWList.py test_LogisticRegression.py test_MSAProbs_tool.py test_MafIO_index.py test_Mafft_tool.py test_MarkovModel.py test_Medline.py test_Muscle_tool.py test_NCBITextParser.py test_NCBIXML.py test_NCBI_BLAST_tools.py test_NCBI_qblast.py test_NMR.py test_NaiveBayes.py test_Nexus.py test_PAML_baseml.py test_PAML_codeml.py test_PAML_tools.py test_PAML_yn00.py test_PDBList.py test_PDB_CEAligner.py test_PDB_DSSP.py test_PDB_Dice.py test_PDB_Disordered.py test_PDB_Exposure.py test_PDB_FragmentMapper.py test_PDB_KDTree.py test_PDB_MMCIF2Dict.py test_PDB_MMCIFIO.py test_PDB_MMCIFParser.py test_PDB_NACCESS.py test_PDB_PDBIO.py test_PDB_PDBParser.py test_PDB_PSEA.py test_PDB_Polypeptide.py test_PDB_QCSuperimposer.py test_PDB_ResidueDepth.py test_PDB_SASA.py test_PDB_SMCRA.py test_PDB_Selection.py test_PDB_StructureAlignment.py test_PDB_Superimposer.py test_PDB_internal_coords.py test_PDB_parse_pdb_header.py test_PDB_vectors.py test_PQR.py test_Pathway.py test_Phd.py test_Phylo.py test_PhyloXML.py test_Phylo_CDAO.py test_Phylo_NeXML.py test_Phylo_matplotlib.py test_Phylo_networkx.py test_PopGen_GenePop.py test_PopGen_GenePop_EasyController.py test_PopGen_GenePop_nodepend.py test_Prank_tool.py test_Probcons_tool.py test_ProtParam.py test_RCSBFormats.py test_Restriction.py test_SCOP_Astral.py test_SCOP_Cla.py test_SCOP_Des.py test_SCOP_Dom.py test_SCOP_Hie.py test_SCOP_Raf.py test_SCOP_Residues.py test_SCOP_Scop.py test_SCOP_online.py test_SVDSuperimposer.py test_SearchIO_blast_tab.py test_SearchIO_blast_tab_index.py test_SearchIO_blast_text.py test_SearchIO_blast_xml.py test_SearchIO_blast_xml_index.py test_SearchIO_blat_psl.py test_SearchIO_blat_psl_index.py test_SearchIO_exonerate.py test_SearchIO_exonerate_text_index.py test_SearchIO_exonerate_vulgar_index.py test_SearchIO_fasta_m10.py test_SearchIO_fasta_m10_index.py test_SearchIO_hhsuite2_text.py test_SearchIO_hmmer2_text.py test_SearchIO_hmmer2_text_index.py test_SearchIO_hmmer3_domtab.py test_SearchIO_hmmer3_domtab_index.py test_SearchIO_hmmer3_tab.py test_SearchIO_hmmer3_tab_index.py test_SearchIO_hmmer3_text.py test_SearchIO_hmmer3_text_index.py test_SearchIO_interproscan_xml.py test_SearchIO_legacy.py test_SearchIO_model.py test_SearchIO_write.py test_SeqFeature.py test_SeqIO.py test_SeqIO_AbiIO.py test_SeqIO_FastaIO.py test_SeqIO_Gck.py test_SeqIO_Insdc.py test_SeqIO_NibIO.py test_SeqIO_PdbIO.py test_SeqIO_QualityIO.py test_SeqIO_SeqXML.py test_SeqIO_SnapGene.py test_SeqIO_TwoBitIO.py test_SeqIO_Xdna.py test_SeqIO_features.py test_SeqIO_index.py test_SeqIO_online.py test_SeqIO_write.py test_SeqRecord.py test_SeqUtils.py test_Seq_objs.py test_SffIO.py test_SwissProt.py test_TCoffee_tool.py test_TogoWS.py test_TreeConstruction.py test_Tutorial.py test_UniGene.py test_UniProt_GOA.py test_Uniprot.py test_Wise.py test_XXmotif_tool.py test_align.py test_align_substitution_matrices.py test_bgzf.py test_cellosaurus.py test_codonalign.py test_geo.py test_kNN.py test_mmtf.py test_mmtf_online.py test_motifs.py test_motifs_online.py test_pairwise2.py test_pairwise2_no_C.py test_pairwise_aligner.py test_pairwise_alignment_map.py test_phenotype.py test_phenotype_fit.py test_phyml_tool.py test_prodoc.py test_prosite.py test_raxml_tool.py test_samtools_tool.py test_seq.py test_translate.py
++ grep -v Phylo
++ grep -v bgzf
++ grep -v SearchIO_blast
++ grep -v pairwise_aligner
++ grep -v SubsMat
++ grep -v Tutorial
C
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Ace.py
test_Ace ... ok
test_check_ACEParser (test_Ace.AceTestOne.test_check_ACEParser)
Test to check that ACEParser can parse the whole file into one record. ... ok
test_check_record_parser (test_Ace.AceTestOne.test_check_record_parser)
Test to check that contig parser parses each contig into a contig. ... ok
test_check_ACEParser (test_Ace.AceTestThree.test_check_ACEParser)
Test to check that ACEParser can parse the whole file into one record. ... ok
test_check_record_parser (test_Ace.AceTestThree.test_check_record_parser)
Test to check that record parser parses each contig into a record. ... ok
test_check_ACEParser (test_Ace.AceTestTwo.test_check_ACEParser)
Test to check that ACEParser can parse the whole file into one record. ... ok
test_check_record_parser (test_Ace.AceTestTwo.test_check_record_parser)
Test to check that record parser parses each contig into a record. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.053 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Affy.py
test_Affy ... ok
testAffy3 (test_Affy.AffyTest.testAffy3) ... ok
testAffy4 (test_Affy.AffyTest.testAffy4) ... ok
testAffyBadHeader (test_Affy.AffyTest.testAffyBadHeader) ... ok
testAffyWrongModeReadV3 (test_Affy.AffyTest.testAffyWrongModeReadV3) ... ok
testAffyWrongModeReadV4 (test_Affy.AffyTest.testAffyWrongModeReadV4) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.024 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
C
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO.py
test_AlignIO ... ok
test_parsing_empty_files (test_AlignIO.TestAlignIO_exceptions.test_parsing_empty_files)
Check that parsing an empty file returns an empty list. ... ok
test_phylip_reject_duplicate (test_AlignIO.TestAlignIO_exceptions.test_phylip_reject_duplicate)
Check that writing duplicated IDs after truncation fails for PHYLIP. ... ok
test_writing_empty_files (test_AlignIO.TestAlignIO_exceptions.test_writing_empty_files)
Check that writers can cope with no alignments. ... ok
test_writing_not_alignments (test_AlignIO.TestAlignIO_exceptions.test_writing_not_alignments)
Check that writers reject records that are not alignments. ... ok
test_reading_alignments_clustal1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_clustal1) ... ok
test_reading_alignments_clustal2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_clustal2) ... ok
test_reading_alignments_clustal3 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_clustal3) ... ok
test_reading_alignments_clustal4 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_clustal4) ... ok
test_reading_alignments_clustal5 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_clustal5) ... ok
test_reading_alignments_clustal6 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_clustal6) ... ok
test_reading_alignments_emboss1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss1) ... ok
test_reading_alignments_emboss2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss2) ... ok
test_reading_alignments_emboss3 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss3) ... ok
test_reading_alignments_emboss4 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss4) ... ok
test_reading_alignments_emboss5 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss5) ... ok
test_reading_alignments_emboss6 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss6) ... ok
test_reading_alignments_emboss7 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss7) ... ok
test_reading_alignments_emboss8 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_emboss8) ... ok
test_reading_alignments_fasta (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta) ... ok
test_reading_alignments_fasta_m10_1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_1) ... ok
test_reading_alignments_fasta_m10_2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_2) ... ok
test_reading_alignments_fasta_m10_3 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_3) ... ok
test_reading_alignments_fasta_m10_4 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_4) ... ok
test_reading_alignments_fasta_m10_5 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_5) ... ok
test_reading_alignments_fasta_m10_6 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_6) ... ok
test_reading_alignments_fasta_m10_7 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_7) ... ok
test_reading_alignments_fasta_m10_8 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_fasta_m10_8) ... ok
test_reading_alignments_ig (test_AlignIO.TestAlignIO_reading.test_reading_alignments_ig) ... ok
test_reading_alignments_maf1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_maf1) ... ok
test_reading_alignments_maf2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_maf2) ... ok
test_reading_alignments_maf3 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_maf3) ... ok
test_reading_alignments_maf4 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_maf4) ... ok
test_reading_alignments_mauve (test_AlignIO.TestAlignIO_reading.test_reading_alignments_mauve) ... ok
test_reading_alignments_msf1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_msf1) ... ok
test_reading_alignments_msf2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_msf2) ... ok
test_reading_alignments_nexus1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_nexus1) ... ok
test_reading_alignments_nexus2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_nexus2) ... ok
test_reading_alignments_phylip1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip1) ... ok
test_reading_alignments_phylip10 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip10) ... ok
test_reading_alignments_phylip2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip2) ... ok
test_reading_alignments_phylip3 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip3) ... ok
test_reading_alignments_phylip4 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip4) ... ok
test_reading_alignments_phylip5 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip5) ... ok
test_reading_alignments_phylip6 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip6) ... ok
test_reading_alignments_phylip7 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip7) ... ok
test_reading_alignments_phylip8 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip8) ... ok
test_reading_alignments_phylip9 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_phylip9) ... ok
test_reading_alignments_pir (test_AlignIO.TestAlignIO_reading.test_reading_alignments_pir) ... ok
test_reading_alignments_stockholm1 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_stockholm1) ... ok
test_reading_alignments_stockholm2 (test_AlignIO.TestAlignIO_reading.test_reading_alignments_stockholm2) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.050 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_ClustalIO.py
test_AlignIO_ClustalIO ... ok
test_biopython_header (test_AlignIO_ClustalIO.TestClustalIO.test_biopython_header)
Make sure we can parse the Biopython header. ... ok
test_cat_one_two (test_AlignIO_ClustalIO.TestClustalIO.test_cat_one_two) ... ok
test_empy (test_AlignIO_ClustalIO.TestClustalIO.test_empy)
Checking empty file. ... ok
test_kalign_header (test_AlignIO_ClustalIO.TestClustalIO.test_kalign_header)
Make sure we can parse the Kalign header. ... ok
test_one (test_AlignIO_ClustalIO.TestClustalIO.test_one) ... ok
test_three (test_AlignIO_ClustalIO.TestClustalIO.test_three) ... ok
test_two (test_AlignIO_ClustalIO.TestClustalIO.test_two) ... ok
test_write_read (test_AlignIO_ClustalIO.TestClustalIO.test_write_read)
Checking write/read. ... ok
test_write_read_single (test_AlignIO_ClustalIO.TestClustalIO.test_write_read_single)
Testing write/read when there is only one sequence. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.064 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_EmbossIO.py
test_AlignIO_EmbossIO ... ok
test_pair_example (test_AlignIO_EmbossIO.TestEmbossIO.test_pair_example) ... ok
test_pair_example2 (test_AlignIO_EmbossIO.TestEmbossIO.test_pair_example2) ... ok
test_pair_example3 (test_AlignIO_EmbossIO.TestEmbossIO.test_pair_example3) ... ok
test_pair_plus_simple (test_AlignIO_EmbossIO.TestEmbossIO.test_pair_plus_simple) ... ok
test_simple_example (test_AlignIO_EmbossIO.TestEmbossIO.test_simple_example) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.059 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_FastaIO.py
test_AlignIO_FastaIO ... ok
test_output001 (test_AlignIO_FastaIO.FastaIOTests.test_output001)
Check output001.m10 file. ... ok
test_output002 (test_AlignIO_FastaIO.FastaIOTests.test_output002)
Check output002.m10 file. ... ok
test_output003 (test_AlignIO_FastaIO.FastaIOTests.test_output003)
Check output003.m10 file. ... ok
test_output004 (test_AlignIO_FastaIO.FastaIOTests.test_output004)
Check output004.m10 file. ... ok
test_output005 (test_AlignIO_FastaIO.FastaIOTests.test_output005)
Check output005.m10 file. ... ok
test_output006 (test_AlignIO_FastaIO.FastaIOTests.test_output006)
Check output006.m10 file. ... ok
test_output007 (test_AlignIO_FastaIO.FastaIOTests.test_output007)
Check output007.m10 file. ... ok
test_output008 (test_AlignIO_FastaIO.FastaIOTests.test_output008)
Check output008.m10 file. ... ok
test_output009 (test_AlignIO_FastaIO.FastaIOTests.test_output009)
Check output009.m10 file. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.068 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_MauveIO.py
test_AlignIO_MauveIO ... ok
test_one (test_AlignIO_MauveIO.TestMauveIO.test_one) ... ok
test_sequence_positions (test_AlignIO_MauveIO.TestMauveIO.test_sequence_positions) ... ok
test_write_read (test_AlignIO_MauveIO.TestMauveIO.test_write_read) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.082 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_PhylipIO.py
test_AlignIO_PhylipIO ... ok
test_concatenation (test_AlignIO_PhylipIO.TestPhylipIO.test_concatenation) ... ok
test_five (test_AlignIO_PhylipIO.TestPhylipIO.test_five) ... ok
test_four (test_AlignIO_PhylipIO.TestPhylipIO.test_four) ... ok
test_one (test_AlignIO_PhylipIO.TestPhylipIO.test_one) ... ok
test_six (test_AlignIO_PhylipIO.TestPhylipIO.test_six) ... ok
test_two_and_three (test_AlignIO_PhylipIO.TestPhylipIO.test_two_and_three) ... ok
test_write_read (test_AlignIO_PhylipIO.TestPhylipIO.test_write_read) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.059 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_convert.py
test_AlignIO_convert ... ok
test_clustal_to_nexus_with_mol_type (test_AlignIO_convert.ConvertTests.test_clustal_to_nexus_with_mol_type)
Converting Clustal to NEXUS with a molecule type. ... ok
test_clustal_to_nexus_without_mol_type (test_AlignIO_convert.ConvertTests.test_clustal_to_nexus_without_mol_type)
Converting Clustal to NEXUS without a molecule type. ... ok
test_convert (test_AlignIO_convert.ConvertTests.test_convert) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.188 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignInfo.py
test_AlignInfo ... ok
test_nucleotides (test_AlignInfo.AlignInfoTests.test_nucleotides) ... ok
test_proteins (test_AlignInfo.AlignInfoTests.test_proteins) ... ok
test_pseudo_count (test_AlignInfo.AlignInfoTests.test_pseudo_count) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.083 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_Alignment.py
test_Align_Alignment ... ok
test_nucleotide_nucleotide_str (test_Align_Alignment.TestAlign_nucleotide_protein_str.test_nucleotide_nucleotide_str) ... ok
test_protein_nucleotide_str (test_Align_Alignment.TestAlign_nucleotide_protein_str.test_protein_nucleotide_str) ... ok
test_aligned (test_Align_Alignment.TestAlign_out_of_order.test_aligned) ... ok
test_array (test_Align_Alignment.TestAlign_out_of_order.test_array) ... ok
test_indices (test_Align_Alignment.TestAlign_out_of_order.test_indices) ... ok
test_row (test_Align_Alignment.TestAlign_out_of_order.test_row) ... ok
test_row_col (test_Align_Alignment.TestAlign_out_of_order.test_row_col) ... ok
test_row_iterable (test_Align_Alignment.TestAlign_out_of_order.test_row_iterable) ... ok
test_row_slice (test_Align_Alignment.TestAlign_out_of_order.test_row_slice) ... ok
test_rows_col (test_Align_Alignment.TestAlign_out_of_order.test_rows_col) ... ok
test_rows_cols (test_Align_Alignment.TestAlign_out_of_order.test_rows_cols) ... ok
test_str (test_Align_Alignment.TestAlign_out_of_order.test_str) ... ok
test_substitutions (test_Align_Alignment.TestAlign_out_of_order.test_substitutions) ... ok
test_empty_alignment (test_Align_Alignment.TestAlignment.test_empty_alignment) ... ok
test_a2m (test_Align_Alignment.TestAlignment_format.test_a2m) ... ok
test_bed (test_Align_Alignment.TestAlignment_format.test_bed) ... ok
test_bigbed (test_Align_Alignment.TestAlignment_format.test_bigbed) ... ok
test_bigmaf (test_Align_Alignment.TestAlignment_format.test_bigmaf) ... ok
test_bigpsl (test_Align_Alignment.TestAlignment_format.test_bigpsl) ... ok
test_clustal (test_Align_Alignment.TestAlignment_format.test_clustal) ... ok
test_emboss (test_Align_Alignment.TestAlignment_format.test_emboss) ... ok
test_exonerate (test_Align_Alignment.TestAlignment_format.test_exonerate) ... ok
test_fasta (test_Align_Alignment.TestAlignment_format.test_fasta) ... ok
test_hhr (test_Align_Alignment.TestAlignment_format.test_hhr) ... ok
test_maf (test_Align_Alignment.TestAlignment_format.test_maf) ... ok
test_mauve (test_Align_Alignment.TestAlignment_format.test_mauve) ... ok
test_msf (test_Align_Alignment.TestAlignment_format.test_msf) ... ok
test_nexus (test_Align_Alignment.TestAlignment_format.test_nexus) ... ok
test_phylip (test_Align_Alignment.TestAlignment_format.test_phylip) ... ok
test_psl (test_Align_Alignment.TestAlignment_format.test_psl) ... ok
test_sam (test_Align_Alignment.TestAlignment_format.test_sam) ... ok
test_stockholm (test_Align_Alignment.TestAlignment_format.test_stockholm) ... ok
test_tabular (test_Align_Alignment.TestAlignment_format.test_tabular) ... ok
test_a2m (test_Align_Alignment.TestAlignment_pairwise_format.test_a2m) ... ok
test_bed (test_Align_Alignment.TestAlignment_pairwise_format.test_bed) ... ok
test_clustal (test_Align_Alignment.TestAlignment_pairwise_format.test_clustal) ... ok
test_exonerate (test_Align_Alignment.TestAlignment_pairwise_format.test_exonerate) ... ok
test_fasta (test_Align_Alignment.TestAlignment_pairwise_format.test_fasta) ... ok
test_maf (test_Align_Alignment.TestAlignment_pairwise_format.test_maf) ... ok
test_phylip (test_Align_Alignment.TestAlignment_pairwise_format.test_phylip) ... ok
test_psl (test_Align_Alignment.TestAlignment_pairwise_format.test_psl) ... ok
test_sam (test_Align_Alignment.TestAlignment_pairwise_format.test_sam) ... ok
test_comparison (test_Align_Alignment.TestMultipleAlignment.test_comparison) ... ok
test_indexing_slicing (test_Align_Alignment.TestMultipleAlignment.test_indexing_slicing) ... ok
test_sort (test_Align_Alignment.TestMultipleAlignment.test_sort) ... ok
test_substitutions (test_Align_Alignment.TestMultipleAlignment.test_substitutions) ... ok
test_target_query_properties (test_Align_Alignment.TestMultipleAlignment.test_target_query_properties) ... ok
test_aligned_indices (test_Align_Alignment.TestPairwiseAlignment.test_aligned_indices) ... ok
test_indexing_slicing (test_Align_Alignment.TestPairwiseAlignment.test_indexing_slicing) ... ok
test_reverse_complement (test_Align_Alignment.TestPairwiseAlignment.test_reverse_complement) ... ok
test_sort (test_Align_Alignment.TestPairwiseAlignment.test_sort) ... ok
test_substitutions (test_Align_Alignment.TestPairwiseAlignment.test_substitutions) ... ok
test_target_query_properties (test_Align_Alignment.TestPairwiseAlignment.test_target_query_properties) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.334 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_a2m.py
test_Align_a2m ... ok
test_clustalw (test_Align_a2m.TestA2MReadingWriting.test_clustalw) ... ok
test_empty (test_Align_a2m.TestA2MReadingWriting.test_empty)
Checking empty file. ... ok
test_kalign (test_Align_a2m.TestA2MReadingWriting.test_kalign) ... ok
test_msaprobs (test_Align_a2m.TestA2MReadingWriting.test_msaprobs) ... ok
test_muscle (test_Align_a2m.TestA2MReadingWriting.test_muscle) ... ok
test_probcons (test_Align_a2m.TestA2MReadingWriting.test_probcons) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.085 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_bed.py
test_Align_bed ... ok
test_reading (test_Align_bed.TestAlign_bed12.test_reading)
Test parsing alignments in file formats BED3 through BED12. ... ok
test_writing (test_Align_bed.TestAlign_bed12.test_writing)
Test writing the alignments in bed12.bed as BED3 through BED12. ... ok
test_reading_psl_34_001 (test_Align_bed.TestAlign_dna.test_reading_psl_34_001)
Test parsing psl_34_001.bed. ... ok
test_reading_psl_34_003 (test_Align_bed.TestAlign_dna.test_reading_psl_34_003)
Test parsing psl_34_003.bed. ... ok
test_reading_psl_34_004 (test_Align_bed.TestAlign_dna.test_reading_psl_34_004)
Test parsing psl_34_004.bed. ... ok
test_reading_psl_34_005 (test_Align_bed.TestAlign_dna.test_reading_psl_34_005)
Test parsing psl_34_005.bed. ... ok
test_writing_psl_34_001 (test_Align_bed.TestAlign_dna.test_writing_psl_34_001)
Test writing the alignments in psl_34_001.bed. ... ok
test_writing_psl_34_003 (test_Align_bed.TestAlign_dna.test_writing_psl_34_003)
Test writing the alignments in psl_34_003.bed. ... ok
test_writing_psl_34_004 (test_Align_bed.TestAlign_dna.test_writing_psl_34_004)
Test writing the alignments in psl_34_004.bed. ... ok
test_writing_psl_34_005 (test_Align_bed.TestAlign_dna.test_writing_psl_34_005)
Test writing the alignments in psl_34_005.bed. ... ok
test_reading (test_Align_bed.TestAlign_dna_rna.test_reading)
Test parsing dna_rna.bed. ... ok
test_writing (test_Align_bed.TestAlign_dna_rna.test_writing)
Test writing the alignments in dna_rna.bed. ... ok
test_reading_psl_35_001 (test_Align_bed.TestAlign_dnax_prot.test_reading_psl_35_001)
Test parsing psl_35_001.bed. ... ok
test_reading_psl_35_002 (test_Align_bed.TestAlign_dnax_prot.test_reading_psl_35_002)
Test parsing psl_35_002.bed. ... ok
test_writing_psl_35_001 (test_Align_bed.TestAlign_dnax_prot.test_writing_psl_35_001)
Test writing the alignments in psl_35_001.bed. ... ok
test_writing_psl_35_002 (test_Align_bed.TestAlign_dnax_prot.test_writing_psl_35_002)
Test writing the alignments in psl_35_002.bed. ... ok
test_reading (test_Align_bed.TestAlign_searching.test_reading)
Test reading bigbedtest.bed. ... ok
test_writing (test_Align_bed.TestAlign_searching.test_writing)
Test writing bigbedtest.bed. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.174 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_bigbed.py
test_Align_bigbed ... ok
test_reading (test_Align_bigbed.TestAlign_bed12.test_reading)
Test parsing alignments in file formats BED3 through BED12. ... ok
test_writing (test_Align_bigbed.TestAlign_bed12.test_writing)
Test Writing alignments in file formats BED3 through BED12. ... ok
test_a_compressed (test_Align_bigbed.TestAlign_big.test_a_compressed) ... skipped 'big file; use --big to run'
test_b_uncompressed (test_Align_bigbed.TestAlign_big.test_b_uncompressed) ... skipped 'big file; use --big to run'
test_c_bed3 (test_Align_bigbed.TestAlign_big.test_c_bed3) ... skipped 'big file; use --big to run'
test_d_bed4 (test_Align_bigbed.TestAlign_big.test_d_bed4) ... skipped 'big file; use --big to run'
test_e_bed5 (test_Align_bigbed.TestAlign_big.test_e_bed5) ... skipped 'big file; use --big to run'
test_f_bed6 (test_Align_bigbed.TestAlign_big.test_f_bed6) ... skipped 'big file; use --big to run'
test_g_bed7 (test_Align_bigbed.TestAlign_big.test_g_bed7) ... skipped 'big file; use --big to run'
test_h_bed8 (test_Align_bigbed.TestAlign_big.test_h_bed8) ... skipped 'big file; use --big to run'
test_i_bed9 (test_Align_bigbed.TestAlign_big.test_i_bed9) ... skipped 'big file; use --big to run'
test_j_extraindex (test_Align_bigbed.TestAlign_big.test_j_extraindex) ... skipped 'big file; use --big to run'
test_k_anogam (test_Align_bigbed.TestAlign_big.test_k_anogam) ... skipped 'big file; use --big to run'
test_l_ailmel (test_Align_bigbed.TestAlign_big.test_l_ailmel) ... skipped 'big file; use --big to run'
test_m_bisbis (test_Align_bigbed.TestAlign_big.test_m_bisbis) ... skipped 'big file; use --big to run'
test_reading_psl_34_001 (test_Align_bigbed.TestAlign_dna.test_reading_psl_34_001)
Test reading psl_34_001.bb. ... ok
test_reading_psl_34_003 (test_Align_bigbed.TestAlign_dna.test_reading_psl_34_003)
Test reading psl_34_003.bb. ... ok
test_reading_psl_34_004 (test_Align_bigbed.TestAlign_dna.test_reading_psl_34_004)
Test reading psl_34_004.bb. ... ok
test_reading_psl_34_005 (test_Align_bigbed.TestAlign_dna.test_reading_psl_34_005)
Test reading psl_34_005.bb. ... ok
test_writing_psl_34_001 (test_Align_bigbed.TestAlign_dna.test_writing_psl_34_001)
Test writing psl_34_001.bb. ... ok
test_writing_psl_34_003 (test_Align_bigbed.TestAlign_dna.test_writing_psl_34_003)
Test writing psl_34_003.bb. ... ok
test_writing_psl_34_004 (test_Align_bigbed.TestAlign_dna.test_writing_psl_34_004)
Test writing psl_34_004.bb. ... ok
test_writing_psl_34_005 (test_Align_bigbed.TestAlign_dna.test_writing_psl_34_005)
Test writing psl_34_005.bb. ... ok
test_reading (test_Align_bigbed.TestAlign_dna_rna.test_reading)
Test parsing dna_rna.bb. ... ok
test_writing (test_Align_bigbed.TestAlign_dna_rna.test_writing)
Test writing dna_rna.bb. ... ok
test_reading_psl_35_001 (test_Align_bigbed.TestAlign_dnax_prot.test_reading_psl_35_001)
Test parsing psl_35_001.bb. ... ok
test_writing_psl_35_001 (test_Align_bigbed.TestAlign_dnax_prot.test_writing_psl_35_001)
Test writing psl_35_001.bb. ... ok
test_reading (test_Align_bigbed.TestAlign_extended_bed.test_reading)
Test parsing bigbed_extended.bb. ... ok
test_writing (test_Align_bigbed.TestAlign_extended_bed.test_writing)
Test writing bigbed_extended.bb. ... ok
test_reading (test_Align_bigbed.TestAlign_searching.test_reading)
Test reading bigbedtest.bb. ... ok
test_search_chromosome (test_Align_bigbed.TestAlign_searching.test_search_chromosome) ... ok
test_search_position (test_Align_bigbed.TestAlign_searching.test_search_position) ... ok
test_search_region (test_Align_bigbed.TestAlign_searching.test_search_region) ... ok
test_three_iterators (test_Align_bigbed.TestAlign_searching.test_three_iterators)
Create three iterators and use them concurrently. ... ok
test_writing (test_Align_bigbed.TestAlign_searching.test_writing)
Test writing bigbedtest.bb. ... ok
test_declarations (test_Align_bigbed.TestDeclarations.test_declarations) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.227 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_bigmaf.py
test_Align_bigmaf ... ok
test_reading (test_Align_bigmaf.TestAlign_bundle_without_target.test_reading)
Test parsing bundle_without_target.bb. ... ok
test_writing (test_Align_bigmaf.TestAlign_bundle_without_target.test_writing)
Test writing bundle_without_target.bb. ... ok
test_declaration (test_Align_bigmaf.TestAlign_declaration.test_declaration) ... ok
test_search_chromosome (test_Align_bigmaf.TestAlign_searching.test_search_chromosome) ... ok
test_search_position (test_Align_bigmaf.TestAlign_searching.test_search_position) ... ok
test_search_region (test_Align_bigmaf.TestAlign_searching.test_search_region) ... ok
test_reading (test_Align_bigmaf.TestAlign_ucsc_mm9_chr10.test_reading)
Test parsing file ucsc_mm9_chr10.bb. ... ok
test_writing (test_Align_bigmaf.TestAlign_ucsc_mm9_chr10.test_writing)
Test writing file ucsc_mm9_chr10.bb. ... ok
test_reading (test_Align_bigmaf.TestAlign_ucsc_test.test_reading)
Test reading ucsc_test.bb. ... ok
test_writing (test_Align_bigmaf.TestAlign_ucsc_test.test_writing)
Test writing ucsc_test.bb. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.501 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_bigpsl.py
test_Align_bigpsl ... ok
test_reading (test_Align_bigpsl.TestAlign_bigpsl.test_reading)
Test parsing bigPsl.bb. ... ok
test_writing (test_Align_bigpsl.TestAlign_bigpsl.test_writing)
Test writing bigPsl.bb. ... ok
test_declaration (test_Align_bigpsl.TestAlign_declaration.test_declaration) ... ok
test_reading_psl_34_001 (test_Align_bigpsl.TestAlign_dna.test_reading_psl_34_001)
Test parsing psl_34_001.psl.bb. ... ok
test_reading_psl_34_003 (test_Align_bigpsl.TestAlign_dna.test_reading_psl_34_003)
Test parsing psl_34_003.psl.bb. ... ok
test_reading_psl_34_004 (test_Align_bigpsl.TestAlign_dna.test_reading_psl_34_004)
Test parsing psl_34_004.psl.bb. ... ok
test_reading_psl_34_005 (test_Align_bigpsl.TestAlign_dna.test_reading_psl_34_005)
Test parsing psl_34_005.psl.bb. ... ok
test_writing_psl_34_001 (test_Align_bigpsl.TestAlign_dna.test_writing_psl_34_001)
Test writing psl_34_001.psl.bb. ... ok
test_writing_psl_34_003 (test_Align_bigpsl.TestAlign_dna.test_writing_psl_34_003)
Test writing psl_34_003.psl.bb. ... ok
test_writing_psl_34_004 (test_Align_bigpsl.TestAlign_dna.test_writing_psl_34_004)
Test writing psl_34_004.psl.bb. ... ok
test_writing_psl_34_005 (test_Align_bigpsl.TestAlign_dna.test_writing_psl_34_005)
Test writing psl_34_005.psl.bb. ... ok
test_reading (test_Align_bigpsl.TestAlign_dna_rna.test_reading)
Test parsing dna_rna.psl.bb. ... ok
test_writing (test_Align_bigpsl.TestAlign_dna_rna.test_writing)
Test writing dna_rna.psl.bb. ... ok
test_reading_psl_35_001 (test_Align_bigpsl.TestAlign_dnax_prot.test_reading_psl_35_001)
Test parsing psl_35_001.psl.bb. ... ok
test_reading_psl_35_002 (test_Align_bigpsl.TestAlign_dnax_prot.test_reading_psl_35_002)
Test parsing psl_35_002.psl.bb. ... ok
test_writing_psl_35_001 (test_Align_bigpsl.TestAlign_dnax_prot.test_writing_psl_35_001)
Test writing psl_35_001.psl.bb. ... ok
test_writing_psl_35_002 (test_Align_bigpsl.TestAlign_dnax_prot.test_writing_psl_35_002)
Test writing psl_35_002.psl.bb. ... ok
test_search_chromosome (test_Align_bigpsl.TestAlign_searching.test_search_chromosome) ... ok
test_search_position (test_Align_bigpsl.TestAlign_searching.test_search_position) ... ok
test_search_region (test_Align_bigpsl.TestAlign_searching.test_search_region) ... ok
test_three_iterators (test_Align_bigpsl.TestAlign_searching.test_three_iterators)
Create three iterators and use them concurrently. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.524 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_clustal.py
test_Align_clustal ... ok
test_clustalw (test_Align_clustal.TestClustalReadingWriting.test_clustalw) ... ok
test_empty (test_Align_clustal.TestClustalReadingWriting.test_empty)
Checking empty file. ... ok
test_kalign (test_Align_clustal.TestClustalReadingWriting.test_kalign)
Make sure we can parse the Kalign header. ... ok
test_msaprobs (test_Align_clustal.TestClustalReadingWriting.test_msaprobs) ... ok
test_muscle (test_Align_clustal.TestClustalReadingWriting.test_muscle) ... ok
test_probcons (test_Align_clustal.TestClustalReadingWriting.test_probcons) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.082 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_emboss.py
test_Align_emboss ... ok
test_local_water2 (test_Align_emboss.TestEmboss.test_local_water2)
Test parsing a local alignment. ... ok
test_matcher_pair (test_Align_emboss.TestEmboss.test_matcher_pair) ... ok
test_matcher_simple (test_Align_emboss.TestEmboss.test_matcher_simple) ... ok
test_needle_asis (test_Align_emboss.TestEmboss.test_needle_asis) ... ok
test_pair_aln_full_blank_line (test_Align_emboss.TestEmboss.test_pair_aln_full_blank_line) ... ok
test_pair_example (test_Align_emboss.TestEmboss.test_pair_example) ... ok
test_pair_example2 (test_Align_emboss.TestEmboss.test_pair_example2) ... ok
test_pair_example3 (test_Align_emboss.TestEmboss.test_pair_example3) ... ok
test_pair_example_nobrief (test_Align_emboss.TestEmboss.test_pair_example_nobrief) ... ok
test_water_reverse1 (test_Align_emboss.TestEmboss.test_water_reverse1) ... ok
test_water_reverse2 (test_Align_emboss.TestEmboss.test_water_reverse2) ... ok
test_water_reverse3 (test_Align_emboss.TestEmboss.test_water_reverse3) ... ok
test_water_reverse4 (test_Align_emboss.TestEmboss.test_water_reverse4) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.098 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_exonerate.py
test_Align_exonerate ... ok
test_exn_22_m_affine_local_cigar (test_Align_exonerate.Exonerate_affine_local.test_exn_22_m_affine_local_cigar)
Test parsing exn_22_m_affine_local_cigar.exn. ... ok
test_exn_22_m_affine_local_vulgar (test_Align_exonerate.Exonerate_affine_local.test_exn_22_m_affine_local_vulgar)
Test parsing exn_22_m_affine_local_vulgar.exn. ... ok
test_exn_22_m_cdna2genome_cigar (test_Align_exonerate.Exonerate_cdna2genome.test_exn_22_m_cdna2genome_cigar)
Test parsing exn_22_m_cdna2genome_cigar.exn. ... ok
test_exn_22_m_cdna2genome_vulgar (test_Align_exonerate.Exonerate_cdna2genome.test_exn_22_m_cdna2genome_vulgar)
Test parsing exn_22_m_cdna2genome_vulgar.exn. ... ok
test_exn_22_m_coding2coding_cigar (test_Align_exonerate.Exonerate_coding2coding.test_exn_22_m_coding2coding_cigar)
Test parsing exn_22_m_coding2coding_cigar.exn. ... ok
test_exn_22_m_coding2coding_vulgar (test_Align_exonerate.Exonerate_coding2coding.test_exn_22_m_coding2coding_vulgar)
Test parsing exn_22_m_coding2coding_vulgar.exn. ... ok
test_exn_22_m_coding2coding_fshifts_cigar (test_Align_exonerate.Exonerate_coding2coding_fshifts.test_exn_22_m_coding2coding_fshifts_cigar)
Test parsing exn_22_m_cigar_fshifts.exn). ... ok
test_exn_22_m_coding2coding_fshifts_vulgar (test_Align_exonerate.Exonerate_coding2coding_fshifts.test_exn_22_m_coding2coding_fshifts_vulgar)
Test parsing exn_22_o_vulgar_fshifts.exn. ... ok
test_exn_22_m_coding2genome_cigar (test_Align_exonerate.Exonerate_coding2genome.test_exn_22_m_coding2genome_cigar)
Test parsing exn_22_m_coding2genome_cigar.exn. ... ok
test_exn_22_m_coding2genome_vulgar (test_Align_exonerate.Exonerate_coding2genome.test_exn_22_m_coding2genome_vulgar)
Test parsing exn_22_m_coding2genome_vulgar.exn. ... ok
test_exn_22_m_dna2protein_cigar (test_Align_exonerate.Exonerate_dna2protein.test_exn_22_m_dna2protein_cigar)
Test parsing exn_22_m_dna2protein_cigar.exn. ... ok
test_exn_22_m_dna2protein_vulgar (test_Align_exonerate.Exonerate_dna2protein.test_exn_22_m_dna2protein_vulgar)
Test parsing exn_22_m_dna2protein_vulgar.exn. ... ok
test_exn_22_m_est2genome_cigar (test_Align_exonerate.Exonerate_est2genome.test_exn_22_m_est2genome_cigar)
Test parsing exn_22_m_est2genome_cigar.exn. ... ok
test_exn_22_m_est2genome_vulgar (test_Align_exonerate.Exonerate_est2genome.test_exn_22_m_est2genome_vulgar)
Test parsing exn_22_m_est2genome_vulgar.exn. ... ok
test_exn_22_m_genome2genome_cigar (test_Align_exonerate.Exonerate_genome2genome.test_exn_22_m_genome2genome_cigar)
Test parsing exn_22_o_vulgar_cigar.exn. ... ok
test_exn_22_m_genome2genome_vulgar (test_Align_exonerate.Exonerate_genome2genome.test_exn_22_m_genome2genome_vulgar)
Test parsing exn_22_o_vulgar.exn. ... ok
test_exn_22_q_multiple_cigar (test_Align_exonerate.Exonerate_multiple.test_exn_22_q_multiple_cigar)
Test parsing exn_22_q_multiple_cigar.exn. ... ok
test_exn_22_q_multiple_vulgar (test_Align_exonerate.Exonerate_multiple.test_exn_22_q_multiple_vulgar)
Test parsing exn_22_q_multiple_vulgar.exn. ... ok
test_exn_22_m_ner_cigar (test_Align_exonerate.Exonerate_ner.test_exn_22_m_ner_cigar)
Test parsing exonerate output (exn_22_m_ner_cigar.exn). ... ok
test_exn_22_m_ner_vulgar (test_Align_exonerate.Exonerate_ner.test_exn_22_m_ner_vulgar)
Test parsing exonerate output (exn_22_m_ner_vulgar.exn). ... ok
test_exn_22_q_none (test_Align_exonerate.Exonerate_none.test_exn_22_q_none)
Test parsing exonerate output (exn_22_q_none.exn). ... ok
test_exn_22_m_protein2dna_cigar (test_Align_exonerate.Exonerate_protein2dna.test_exn_22_m_protein2dna_cigar)
Test parsing exonerate output (exn_22_m_protein2dna_cigar.exn). ... ok
test_exn_22_m_protein2dna_vulgar (test_Align_exonerate.Exonerate_protein2dna.test_exn_22_m_protein2dna_vulgar)
Test parsing exonerate output (exn_22_m_protein2dna_vulgar.exn). ... ok
test_exn_22_m_protein2dna_fshifts_cigar (test_Align_exonerate.Exonerate_protein2dna_fshifts.test_exn_22_m_protein2dna_fshifts_cigar)
Test parsing exonerate output (exn_22_o_cigar_fshifts2.exn). ... ok
test_exn_22_m_protein2dna_fshifts_vulgar (test_Align_exonerate.Exonerate_protein2dna_fshifts.test_exn_22_m_protein2dna_fshifts_vulgar)
Test parsing exonerate output (exn_22_o_vulgar_fshifts2.exn). ... ok
test_exn_22_m_protein2genome_cigar (test_Align_exonerate.Exonerate_protein2genome.test_exn_22_m_protein2genome_cigar)
Test parsing exn_22_m_protein2genome_cigar.exn. ... ok
test_exn_22_m_protein2genome_vulgar (test_Align_exonerate.Exonerate_protein2genome.test_exn_22_m_protein2genome_vulgar)
Test parsing exn_22_m_protein2genome_vulgar.exn. ... ok
test_exn_24_protein2genome_met_intron_cigar (test_Align_exonerate.Exonerate_protein2genome_met_intron.test_exn_24_protein2genome_met_intron_cigar)
Test parsing exn_24_m_protein2genome_met_intron_cigar.exn. ... ok
test_exn_24_protein2genome_met_intron_vulgar (test_Align_exonerate.Exonerate_protein2genome_met_intron.test_exn_24_protein2genome_met_intron_vulgar)
Test parsing exn_24_m_protein2genome_met_intron_vulgar.exn. ... ok
test_exn_24_m_protein2genome_revcomp_fshifts_cigar (test_Align_exonerate.Exonerate_protein2genome_revcomp_fshifts.test_exn_24_m_protein2genome_revcomp_fshifts_cigar)
Test parsing exn_24_m_protein2genome_revcomp_fshifts_cigar.exn. ... ok
test_exn_24_m_protein2genome_revcomp_fshifts_vulgar (test_Align_exonerate.Exonerate_protein2genome_revcomp_fshifts.test_exn_24_m_protein2genome_revcomp_fshifts_vulgar)
Test parsing exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn. ... ok
test_exn_22_m_ungapped_cigar (test_Align_exonerate.Exonerate_ungapped.test_exn_22_m_ungapped_cigar)
Test parsing exn_22_m_ungapped_cigar.exn. ... ok
test_exn_22_m_ungapped_vulgar (test_Align_exonerate.Exonerate_ungapped.test_exn_22_m_ungapped_vulgar)
Test parsing exn_22_m_ungapped_vulgar.exn. ... ok
test_exn_22_m_ungapped_trans_cigar (test_Align_exonerate.Exonerate_ungapped_trans.test_exn_22_m_ungapped_trans_cigar)
Test parsing exn_22_m_ungapped_trans_cigar.exn. ... ok
test_exn_22_m_ungapped_trans_vulgar (test_Align_exonerate.Exonerate_ungapped_trans.test_exn_22_m_ungapped_trans_vulgar)
Test parsing exn_22_m_ungapped_trans_vulgar.exn. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.157 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_fasta.py
test_Align_fasta ... ok
test_clustalw (test_Align_fasta.TestFASTAReadingWriting.test_clustalw) ... ok
test_empty (test_Align_fasta.TestFASTAReadingWriting.test_empty)
Checking empty file. ... ok
test_kalign (test_Align_fasta.TestFASTAReadingWriting.test_kalign) ... ok
test_msaprobs (test_Align_fasta.TestFASTAReadingWriting.test_msaprobs) ... ok
test_muscle (test_Align_fasta.TestFASTAReadingWriting.test_muscle) ... ok
test_probcons (test_Align_fasta.TestFASTAReadingWriting.test_probcons) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.080 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_hhr.py
test_Align_hhr ... ok
test_length (test_Align_hhr.Align_hhr_2uvo_hhblits.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_2uvo_hhblits.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_2uvo_hhblits_emptytable.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_2uvo_hhblits_emptytable.test_reading) ... ok
test_reading (test_Align_hhr.Align_hhr_2uvo_hhblits_onlyheader.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_2uvo_hhsearch.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_2uvo_hhsearch.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_4p79_hhsearch_server_NOssm.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_4p79_hhsearch_server_NOssm.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_4y9h_hhsearch_server_NOssm.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_4y9h_hhsearch_server_NOssm.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_allx.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_allx.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_hhpred_9590198.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_hhpred_9590198.test_reading) ... ok
test_length (test_Align_hhr.Align_hhr_hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.test_length)
Test getting the number of alignments without parsing the file. ... ok
test_reading (test_Align_hhr.Align_hhr_hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.test_reading) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.324 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_maf.py
test_Align_maf ... ok
test_reading_bug2453 (test_Align_maf.TestAlign_reading.test_reading_bug2453)
Test parsing bug2453.maf. ... ok
test_reading_bundle_without_target (test_Align_maf.TestAlign_reading.test_reading_bundle_without_target)
Test parsing bundle_without_target.maf. ... ok
test_reading_length_coords_mismatch (test_Align_maf.TestAlign_reading.test_reading_length_coords_mismatch)
Test parsing inconsistent MAF file length_coords_mismatch.maf. ... ok
test_reading_missing_signature (test_Align_maf.TestAlign_reading.test_reading_missing_signature)
Test parsing MAF file ucsc_mm9_chr10_big.maf with missing signature. ... ok
test_reading_ucsc_mm9_chr10 (test_Align_maf.TestAlign_reading.test_reading_ucsc_mm9_chr10)
Test parsing MAF file ucsc_mm9_chr10.maf. ... ok
test_reading_ucsc_mm9_chr10_bad (test_Align_maf.TestAlign_reading.test_reading_ucsc_mm9_chr10_bad)
Test parsing MAF file ucsc_mm9_chr10_bad.maf with incorrect sequence size. ... ok
test_reading_ucsc_test (test_Align_maf.TestAlign_reading.test_reading_ucsc_test)
Test parsing ucsc_test.maf. ... ok
test_writing_bug2453 (test_Align_maf.TestAlign_writing.test_writing_bug2453)
Test reading and writing bug2453.maf. ... ok
test_writing_bundle_without_target (test_Align_maf.TestAlign_writing.test_writing_bundle_without_target)
Test reading and writing bundle_without_target.maf. ... ok
test_writing_ucsc_mm9_chr10 (test_Align_maf.TestAlign_writing.test_writing_ucsc_mm9_chr10)
Test reading and writing ucsc_mm9_chr10.maf. ... ok
test_writing_ucsc_test (test_Align_maf.TestAlign_writing.test_writing_ucsc_test)
Test reading and writing ucsc_test.maf. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.419 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_mauve.py
test_Align_mauve ... ok
test_parse (test_Align_mauve.TestCombinedFile.test_parse) ... ok
test_write_read (test_Align_mauve.TestCombinedFile.test_write_read) ... ok
test_parse (test_Align_mauve.TestDSeparateFiles.test_parse) ... ok
test_write_read (test_Align_mauve.TestDSeparateFiles.test_write_read) ... ok
test_empty (test_Align_mauve.TestMauveBasic.test_empty) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.101 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_msf.py
test_Align_msf ... ok
test_empty (test_Align_msf.TestMSF.test_empty)
Checking empty file. ... ok
test_protein1 (test_Align_msf.TestMSF.test_protein1) ... ok
test_protein2 (test_Align_msf.TestMSF.test_protein2) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.064 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_nexus.py
test_Align_nexus ... ok
test_empty (test_Align_nexus.TestNexusBasic.test_empty) ... ok
test_nexus1 (test_Align_nexus.TestNexusReading.test_nexus1) ... ok
test_nexus2 (test_Align_nexus.TestNexusReading.test_nexus2) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.105 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_phylip.py
test_Align_phylip ... ok
test_five_and_six (test_Align_phylip.TestPhylipReading.test_five_and_six) ... ok
test_four (test_Align_phylip.TestPhylipReading.test_four) ... ok
test_one (test_Align_phylip.TestPhylipReading.test_one) ... ok
test_two_and_three (test_Align_phylip.TestPhylipReading.test_two_and_three) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.086 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_psl.py
test_Align_psl ... ok
test_reading_psl_34_001 (test_Align_psl.TestAlign_dna.test_reading_psl_34_001)
Test parsing psl_34_001.psl and pslx_34_001.pslx. ... ok
test_reading_psl_34_002 (test_Align_psl.TestAlign_dna.test_reading_psl_34_002)
Test parsing psl_34_002.psl and pslx_34_002.pslx. ... ok
test_reading_psl_34_003 (test_Align_psl.TestAlign_dna.test_reading_psl_34_003)
Test parsing psl_34_003.psl and pslx_34_003.pslx. ... ok
test_reading_psl_34_004 (test_Align_psl.TestAlign_dna.test_reading_psl_34_004)
Test parsing psl_34_004.psl and pslx_34_004.pslx. ... ok
test_reading_psl_34_005 (test_Align_psl.TestAlign_dna.test_reading_psl_34_005)
Test parsing psl_34_005.psl and pslx_34_005.pslx. ... ok
test_writing_psl_34_001 (test_Align_psl.TestAlign_dna.test_writing_psl_34_001)
Test writing the alignments in psl_34_001.psl. ... ok
test_writing_psl_34_002 (test_Align_psl.TestAlign_dna.test_writing_psl_34_002)
Test writing the alignments in psl_34_002.psl. ... ok
test_writing_psl_34_003 (test_Align_psl.TestAlign_dna.test_writing_psl_34_003)
Test writing the alignments in psl_34_003.psl. ... ok
test_writing_psl_34_004 (test_Align_psl.TestAlign_dna.test_writing_psl_34_004)
Test writing the alignments in psl_34_004.psl. ... ok
test_writing_psl_34_005 (test_Align_psl.TestAlign_dna.test_writing_psl_34_005)
Test writing the alignments in psl_34_005.psl. ... ok
test_reading (test_Align_psl.TestAlign_dna_rna.test_reading)
Test parsing dna_rna.psl. ... ok
test_writing (test_Align_psl.TestAlign_dna_rna.test_writing)
Test writing the alignments in dna_rna.psl. ... ok
test_reading_psl_35_001 (test_Align_psl.TestAlign_dnax_prot.test_reading_psl_35_001)
Test parsing psl_35_001.psl and pslx_35_001.pslx. ... ok
test_reading_psl_35_002 (test_Align_psl.TestAlign_dnax_prot.test_reading_psl_35_002)
Test parsing psl_35_002.psl. ... ok
test_writing_psl_35_001 (test_Align_psl.TestAlign_dnax_prot.test_writing_psl_35_001)
Test writing the alignments in psl_35_001.psl. ... ok
test_writing_psl_35_002 (test_Align_psl.TestAlign_dnax_prot.test_writing_psl_35_002)
Test writing the alignments in psl_35_002.psl. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.434 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_sam.py
test_Align_sam ... ok
test_4D8I6M (test_Align_sam.TestAlign_clippping.test_4D8I6M)
Test alignment starting with deletion followed by insertion. ... ok
test_4I8D6M (test_Align_sam.TestAlign_clippping.test_4I8D6M)
Test alignment starting with insertion followed by deletion. ... ok
test_4S6M (test_Align_sam.TestAlign_clippping.test_4S6M)
Test alignment starting with soft clip at non-zero position. ... ok
test_4S8D6M (test_Align_sam.TestAlign_clippping.test_4S8D6M)
Test alignment starting with soft clip followed by deletion. ... ok
test_4S8I6M (test_Align_sam.TestAlign_clippping.test_4S8I6M)
Test alignment starting with soft clip followed by insertion. ... ok
test_6M (test_Align_sam.TestAlign_clippping.test_6M)
Test alignment starting at non-zero position. ... ok
test_8D6M_ex1 (test_Align_sam.TestAlign_clippping.test_8D6M_ex1)
Test alignment starting with deletion. ... ok
test_8D6M_ex2 (test_Align_sam.TestAlign_clippping.test_8D6M_ex2)
Test alignment starting with deletion at non-zero position. ... ok
test_8I6M_ex1 (test_Align_sam.TestAlign_clippping.test_8I6M_ex1)
Test alignment starting with insertion. ... ok
test_8I6M_ex2 (test_Align_sam.TestAlign_clippping.test_8I6M_ex2)
Test alignment starting with insertion at non-zero position. ... ok
test_8S6M (test_Align_sam.TestAlign_clippping.test_8S6M)
Test alignment starting with soft clip. ... ok
test_reading_psl_34_001 (test_Align_sam.TestAlign_dna.test_reading_psl_34_001)
Test parsing psl_34_001.sam. ... ok
test_reading_psl_34_003 (test_Align_sam.TestAlign_dna.test_reading_psl_34_003)
Test parsing psl_34_003.sam. ... ok
test_reading_psl_34_004 (test_Align_sam.TestAlign_dna.test_reading_psl_34_004)
Test parsing psl_34_004.sam. ... ok
test_reading_psl_34_005 (test_Align_sam.TestAlign_dna.test_reading_psl_34_005)
Test parsing psl_34_005.sam. ... ok
test_writing_psl_34_001 (test_Align_sam.TestAlign_dna.test_writing_psl_34_001)
Test writing the alignments in psl_34_001.sam. ... ok
test_writing_psl_34_003 (test_Align_sam.TestAlign_dna.test_writing_psl_34_003)
Test writing the alignments in psl_34_003.sam. ... ok
test_writing_psl_34_004 (test_Align_sam.TestAlign_dna.test_writing_psl_34_004)
Test writing the alignments in psl_34_004.sam. ... ok
test_writing_psl_34_005 (test_Align_sam.TestAlign_dna.test_writing_psl_34_005)
Test writing the alignments in psl_34_005.sam. ... ok
test_reading (test_Align_sam.TestAlign_dna_rna.test_reading)
Test parsing dna_rna.sam. ... ok
test_reading_psl_comparison (test_Align_sam.TestAlign_dna_rna.test_reading_psl_comparison)
Test parsing dna_rna.sam and comparing to dna_rna.psl. ... ok
test_writing (test_Align_sam.TestAlign_dna_rna.test_writing)
Test writing the alignments in dna_rna.sam. ... ok
test_ex1 (test_Align_sam.TestAlign_sambam.test_ex1) ... ok
test_ex1_header (test_Align_sam.TestAlign_sambam.test_ex1_header) ... ok
test_sam1 (test_Align_sam.TestAlign_sambam.test_sam1) ... ok
test_sam2 (test_Align_sam.TestAlign_sambam.test_sam2) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.343 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_stockholm.py
test_Align_stockholm ... ok
test_reading_alignments_cath1 (test_Align_stockholm.TestStockholm_reading.test_reading_alignments_cath1)
Test parsing CATH record 3.30.160.60/FF/004774. ... ok
test_reading_alignments_cath2 (test_Align_stockholm.TestStockholm_reading.test_reading_alignments_cath2)
Test parsing CATH record 2.105.10.10/FF/000002. ... ok
test_reading_alignments_cath3 (test_Align_stockholm.TestStockholm_reading.test_reading_alignments_cath3)
Test parsing CATH record 1.10.275.10/FF/000026. ... ok
test_reading_example (test_Align_stockholm.TestStockholm_reading.test_reading_example)
Test parsing Pfam record HAT as the docstring example. ... ok
test_reading_writing_alignments_globins45 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_globins45)
Test parsing hmmalign output. ... ok
test_reading_writing_alignments_pfam1 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam1)
Test parsing Pfam record 120_Rick_ant. ... ok
test_reading_writing_alignments_pfam2 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam2)
Test parsing Pfam record 7kD_DNA_binding. ... ok
test_reading_writing_alignments_pfam3 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam3)
Test parsing Pfam record 12TM_1. ... ok
test_reading_writing_alignments_pfam4 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam4)
Test parsing Pfam record 3Beta_HSD. ... ok
test_reading_writing_alignments_pfam5 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam5)
Test parsing Pfam record ArsP_1. ... ok
test_reading_writing_alignments_pfam6 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam6)
Test parsing Pfam record COX2_TM. ... ok
test_reading_writing_alignments_pfam7 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam7)
Test parsing Pfam record Alpha_E1_glycop. ... ok
test_reading_writing_alignments_pfam8 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam8)
Test parsing Pfam record Cyclin_N. ... ok
test_reading_writing_alignments_pfam9 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_pfam9)
Test parsing Pfam record SH3_11. ... ok
test_reading_writing_alignments_rfam1 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_rfam1)
Test parsing Rfam record BTnc005. ... ok
test_reading_writing_alignments_rfam2 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_rfam2)
Test parsing Rfam record SraC_RyeA. ... ok
test_reading_writing_alignments_rfam3 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_rfam3)
Test parsing Rfam record McaS. ... ok
test_reading_writing_alignments_rfam4 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_rfam4)
Test parsing Rfam record IRES_KSHV. ... ok
test_reading_writing_alignments_rfam5 (test_Align_stockholm.TestStockholm_reading.test_reading_writing_alignments_rfam5)
Test parsing Rfam record BMV3_UPD-PK3. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.730 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Align_tabular.py
test_Align_tabular ... ok
test_2226_tblastn_001 (test_Align_tabular.TestBlast.test_2226_tblastn_001) ... ok
test_2226_tblastn_002 (test_Align_tabular.TestBlast.test_2226_tblastn_002) ... ok
test_2226_tblastn_003 (test_Align_tabular.TestBlast.test_2226_tblastn_003) ... ok
test_2226_tblastn_004 (test_Align_tabular.TestBlast.test_2226_tblastn_004) ... ok
test_2226_tblastn_005 (test_Align_tabular.TestBlast.test_2226_tblastn_005) ... ok
test_2226_tblastn_007 (test_Align_tabular.TestBlast.test_2226_tblastn_007) ... ok
test_2226_tblastn_008 (test_Align_tabular.TestBlast.test_2226_tblastn_008) ... ok
test_2226_tblastn_009 (test_Align_tabular.TestBlast.test_2226_tblastn_009) ... ok
test_2226_tblastn_010 (test_Align_tabular.TestBlast.test_2226_tblastn_010) ... ok
test_2226_tblastn_011 (test_Align_tabular.TestBlast.test_2226_tblastn_011) ... ok
test_2226_tblastn_012 (test_Align_tabular.TestBlast.test_2226_tblastn_012) ... ok
test_2228_tblastn_001 (test_Align_tabular.TestBlast.test_2228_tblastn_001) ... ok
test_2228_tblastx_001 (test_Align_tabular.TestBlast.test_2228_tblastx_001) ... ok
test_empty (test_Align_tabular.TestFastaBasic.test_empty) ... ok
test_m8CB (test_Align_tabular.TestFastaNucleotide.test_m8CB) ... ok
test_m8CC (test_Align_tabular.TestFastaNucleotide.test_m8CC) ... ok
test_m8CB (test_Align_tabular.TestFastaProtein.test_m8CB) ... ok
test_m8CC (test_Align_tabular.TestFastaProtein.test_m8CC) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.458 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Application.py
test_Application ... ok
test_echo (test_Application.TestApp.test_echo) ... ok
test_echo_capture_both (test_Application.TestApp.test_echo_capture_both) ... ok
test_echo_capture_neither (test_Application.TestApp.test_echo_capture_neither) ... ok
test_echo_capture_stderr (test_Application.TestApp.test_echo_capture_stderr) ... ok
test_echo_capture_stdout (test_Application.TestApp.test_echo_capture_stdout) ... ok
test_echo_file_both (test_Application.TestApp.test_echo_file_both) ... ok
test_echo_file_same (test_Application.TestApp.test_echo_file_same) ... ok
test_echo_file_stderr (test_Application.TestApp.test_echo_file_stderr) ... ok
test_echo_file_stdout (test_Application.TestApp.test_echo_file_stdout) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.063 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BWA_tool.py
test_BWA_tool ... skipping. Install bwa and correctly set the file path to the program if you want to use it from Biopython
----------------------------------------------------------------------
Ran 1 test in 0.031 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_MySQLdb.py
test_BioSQL_MySQLdb ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
----------------------------------------------------------------------
Ran 1 test in 0.140 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_MySQLdb_online.py
test_BioSQL_MySQLdb_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.098 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_mysql_connector.py
test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
----------------------------------------------------------------------
Ran 1 test in 0.097 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_mysql_connector_online.py
test_BioSQL_mysql_connector_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.097 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_psycopg2.py
test_BioSQL_psycopg2 ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
----------------------------------------------------------------------
Ran 1 test in 0.094 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_psycopg2_online.py
test_BioSQL_psycopg2_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.096 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_sqlite3.py
test_BioSQL_sqlite3 ... ok
test_SeqIO_loading (common_BioSQL.AutoSeqIOTests.test_SeqIO_loading) ... ok
test_backwards_compatibility (test_BioSQL_sqlite3.BackwardsCompatibilityTest.test_backwards_compatibility)
Check can re-use an old BioSQL SQLite3 database. ... ok
test_NC_000932 (common_BioSQL.ClosedLoopTest.test_NC_000932)
From GenBank file to BioSQL and back to a GenBank file, NC_000932. ... ok
test_NC_005816 (common_BioSQL.ClosedLoopTest.test_NC_005816)
From GenBank file to BioSQL and back to a GenBank file, NC_005816. ... ok
test_NT_019265 (common_BioSQL.ClosedLoopTest.test_NT_019265)
From GenBank file to BioSQL and back to a GenBank file, NT_019265. ... ok
test_arab1 (common_BioSQL.ClosedLoopTest.test_arab1)
From GenBank file to BioSQL and back to a GenBank file, arab1. ... ok
test_cor6_6 (common_BioSQL.ClosedLoopTest.test_cor6_6)
From GenBank file to BioSQL and back to a GenBank file, cor6_6. ... ok
test_no_ref (common_BioSQL.ClosedLoopTest.test_no_ref)
From GenBank file to BioSQL and back to a GenBank file, noref. ... ok
test_one_of (common_BioSQL.ClosedLoopTest.test_one_of)
From GenBank file to BioSQL and back to a GenBank file, one_of. ... ok
test_protein_refseq2 (common_BioSQL.ClosedLoopTest.test_protein_refseq2)
From GenBank file to BioSQL and back to a GenBank file, protein_refseq2. ... ok
test_del_db_items (common_BioSQL.DeleteTest.test_del_db_items)
Check all associated data is deleted from an item. ... ok
test_server (common_BioSQL.DeleteTest.test_server)
Check BioSeqDatabase methods. ... ok
test_duplicate_id_load (common_BioSQL.DupLoadTest.test_duplicate_id_load)
Make sure can't import records with same ID (in one go). ... ok
test_duplicate_load (common_BioSQL.DupLoadTest.test_duplicate_load)
Make sure can't import a single record twice (in one go). ... ok
test_duplicate_load2 (common_BioSQL.DupLoadTest.test_duplicate_load2)
Make sure can't import a single record twice (in steps). ... ok
test_record_loading (common_BioSQL.InDepthLoadTest.test_record_loading)
Make sure all records are correctly loaded. ... ok
test_reload (common_BioSQL.InDepthLoadTest.test_reload)
Make sure can't reimport existing records. ... ok
test_seq_feature (common_BioSQL.InDepthLoadTest.test_seq_feature)
In depth check that SeqFeatures are transmitted through the db. ... ok
test_transfer (common_BioSQL.InDepthLoadTest.test_transfer)
Make sure can load record into another namespace. ... ok
test_load_database (common_BioSQL.LoaderTest.test_load_database)
Load SeqRecord objects into a BioSQL database. ... ok
test_cross_retrieval_of_items (common_BioSQL.MultiReadTest.test_cross_retrieval_of_items)
Test that valid ids can't be retrieved between namespaces. ... ok
test_get_db_items (common_BioSQL.MultiReadTest.test_get_db_items)
Check list, keys, length etc. ... ok
test_server (common_BioSQL.MultiReadTest.test_server)
Check BioSeqDatabase methods. ... ok
test_get_db_items (common_BioSQL.ReadTest.test_get_db_items)
Check list, keys, length etc. ... ok
test_lookup_items (common_BioSQL.ReadTest.test_lookup_items)
Test retrieval of items using various ids. ... ok
test_server (common_BioSQL.ReadTest.test_server)
Check BioSeqDatabase methods. ... ok
test_addition (common_BioSQL.SeqInterfaceTest.test_addition)
Check can add Seq objects from BioSQL together. ... ok
test_convert (common_BioSQL.SeqInterfaceTest.test_convert)
Check can turn a Seq object from BioSQL into a Seq or MutableSeq. ... ok
test_eq (common_BioSQL.SeqInterfaceTest.test_eq) ... ok
test_ge (common_BioSQL.SeqInterfaceTest.test_ge) ... ok
test_gt (common_BioSQL.SeqInterfaceTest.test_gt) ... ok
test_le (common_BioSQL.SeqInterfaceTest.test_le) ... ok
test_lt (common_BioSQL.SeqInterfaceTest.test_lt) ... ok
test_multiplication (common_BioSQL.SeqInterfaceTest.test_multiplication)
Check can multiply Seq objects from BioSQL by integers. ... ok
test_ne (common_BioSQL.SeqInterfaceTest.test_ne) ... ok
test_record_slicing (common_BioSQL.SeqInterfaceTest.test_record_slicing)
Check that slices of DBSeqRecord are retrieved properly. ... ok
test_seq (common_BioSQL.SeqInterfaceTest.test_seq)
Make sure Seqs from BioSQL implement the right interface. ... ok
test_seq_features (common_BioSQL.SeqInterfaceTest.test_seq_features)
Check SeqFeatures of a sequence. ... ok
test_seq_record (common_BioSQL.SeqInterfaceTest.test_seq_record)
Make sure SeqRecords from BioSQL implement the right interface. ... ok
test_seq_slicing (common_BioSQL.SeqInterfaceTest.test_seq_slicing)
Check that slices of sequences are retrieved properly. ... ok
test_ambiguous_location (common_BioSQL.SwissProtUnknownPositionTest.test_ambiguous_location)
Loaded uniprot-xml with ambiguous location in BioSQL. ... ok
test_add (common_BioSQL.TestBaseClassMethods.test_add) ... ok
test_bytes (common_BioSQL.TestBaseClassMethods.test_bytes) ... ok
test_contains (common_BioSQL.TestBaseClassMethods.test_contains) ... ok
test_count (common_BioSQL.TestBaseClassMethods.test_count) ... ok
test_endswith (common_BioSQL.TestBaseClassMethods.test_endswith) ... ok
test_find (common_BioSQL.TestBaseClassMethods.test_find) ... ok
test_hash (common_BioSQL.TestBaseClassMethods.test_hash) ... ok
test_index (common_BioSQL.TestBaseClassMethods.test_index) ... ok
test_lower (common_BioSQL.TestBaseClassMethods.test_lower) ... ok
test_lstrip (common_BioSQL.TestBaseClassMethods.test_lstrip) ... ok
test_mul (common_BioSQL.TestBaseClassMethods.test_mul) ... ok
test_radd (common_BioSQL.TestBaseClassMethods.test_radd) ... ok
test_replace (common_BioSQL.TestBaseClassMethods.test_replace) ... ok
test_repr (common_BioSQL.TestBaseClassMethods.test_repr) ... ok
test_rfind (common_BioSQL.TestBaseClassMethods.test_rfind) ... ok
test_rindex (common_BioSQL.TestBaseClassMethods.test_rindex) ... ok
test_rsplit (common_BioSQL.TestBaseClassMethods.test_rsplit) ... ok
test_rstrip (common_BioSQL.TestBaseClassMethods.test_rstrip) ... ok
test_split (common_BioSQL.TestBaseClassMethods.test_split) ... ok
test_startswith (common_BioSQL.TestBaseClassMethods.test_startswith) ... ok
test_str (common_BioSQL.TestBaseClassMethods.test_str) ... ok
test_strip (common_BioSQL.TestBaseClassMethods.test_strip) ... ok
test_translate (common_BioSQL.TestBaseClassMethods.test_translate) ... ok
test_upper (common_BioSQL.TestBaseClassMethods.test_upper) ... ok
test_NC_000932 (common_BioSQL.TransferTest.test_NC_000932)
From GenBank file to BioSQL, then again to a new namespace, NC_000932. ... ok
test_NC_005816 (common_BioSQL.TransferTest.test_NC_005816)
From GenBank file to BioSQL, then again to a new namespace, NC_005816. ... ok
test_NT_019265 (common_BioSQL.TransferTest.test_NT_019265)
From GenBank file to BioSQL, then again to a new namespace, NT_019265. ... ok
test_arab1 (common_BioSQL.TransferTest.test_arab1)
From GenBank file to BioSQL, then again to a new namespace, arab1. ... ok
test_cor6_6 (common_BioSQL.TransferTest.test_cor6_6)
From GenBank file to BioSQL, then again to a new namespace, cor6_6. ... ok
test_no_ref (common_BioSQL.TransferTest.test_no_ref)
From GenBank file to BioSQL, then again to a new namespace, noref. ... ok
test_one_of (common_BioSQL.TransferTest.test_one_of)
From GenBank file to BioSQL, then again to a new namespace, one_of. ... ok
test_protein_refseq2 (common_BioSQL.TransferTest.test_protein_refseq2)
From GenBank file to BioSQL, then again to a new namespace, protein_refseq2. ... ok
----------------------------------------------------------------------
Ran 1 test in 4.337 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_sqlite3_online.py
test_BioSQL_sqlite3_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.102 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Blast_Record.py
test_Blast_Record ... ok
test_str (test_Blast_Record.TestHsp.test_str) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.052 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_CAPS.py
test_CAPS ... ok
test (test_CAPS.TestCAPS.test) ... ok
testNoCAPS (test_CAPS.TestCAPS.testNoCAPS) ... ok
testNoCAPS_msa (test_CAPS.TestCAPS.testNoCAPS_msa) ... ok
test_msa (test_CAPS.TestCAPS.test_msa) ... ok
test_trivial (test_CAPS.TestCAPS.test_trivial) ... ok
test_trivial_msa (test_CAPS.TestCAPS.test_trivial_msa) ... ok
test_uneven (test_CAPS.TestCAPS.test_uneven) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.148 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Chi2.py
test_Chi2 ... ok
test_cdf_chi2 (test_Chi2.ModTest.test_cdf_chi2) ... ok
test_incomplete_gamma (test_Chi2.ModTest.test_incomplete_gamma) ... ok
test_ln_gamma (test_Chi2.ModTest.test_ln_gamma) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.109 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_ClustalOmega_tool.py
test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.093 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Clustalw_tool.py
test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.094 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Cluster.py
test_Cluster ... ok
test_clusterdistance (test_Cluster.TestCluster.test_clusterdistance) ... ok
test_clusterdistance_arguments (test_Cluster.TestCluster.test_clusterdistance_arguments) ... ok
test_distancematrix_arguments (test_Cluster.TestCluster.test_distancematrix_arguments) ... ok
test_distancematrix_kmedoids (test_Cluster.TestCluster.test_distancematrix_kmedoids) ... ok
test_kcluster (test_Cluster.TestCluster.test_kcluster) ... ok
test_kcluster_arguments (test_Cluster.TestCluster.test_kcluster_arguments) ... ok
test_kmedoids_arguments (test_Cluster.TestCluster.test_kmedoids_arguments) ... ok
test_mask_parse (test_Cluster.TestCluster.test_mask_parse) ... ok
test_matrix_parse (test_Cluster.TestCluster.test_matrix_parse) ... ok
test_pca (test_Cluster.TestCluster.test_pca) ... ok
test_pca_arguments (test_Cluster.TestCluster.test_pca_arguments) ... ok
test_somcluster (test_Cluster.TestCluster.test_somcluster) ... ok
test_somcluster_arguments (test_Cluster.TestCluster.test_somcluster_arguments) ... ok
test_tree (test_Cluster.TestCluster.test_tree) ... ok
test_tree_arguments (test_Cluster.TestCluster.test_tree_arguments) ... ok
test_treecluster (test_Cluster.TestCluster.test_treecluster) ... ok
test_treecluster_arguments (test_Cluster.TestCluster.test_treecluster_arguments) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.056 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_CodonTable.py
test_CodonTable ... ok
test_coding (test_CodonTable.AmbiguousCodonsTests.test_coding)
Check a few ambiguous codons for correct coding. ... ok
test_list_ambiguous_codons (test_CodonTable.AmbiguousCodonsTests.test_list_ambiguous_codons)
Check if stop codons are properly extended. ... ok
test_start_codons (test_CodonTable.AmbiguousCodonsTests.test_start_codons)
Test various ambiguous codons as start codon. ... ok
test_stop_codons (test_CodonTable.AmbiguousCodonsTests.test_stop_codons)
Test various ambiguous codons as stop codon. ... ok
test_ambiguous_tables (test_CodonTable.BasicSanityTests.test_ambiguous_tables)
Check if all IDs and all names are present in ambiguous tables. ... ok
test_complete_tables (test_CodonTable.BasicSanityTests.test_complete_tables)
Check if all unambiguous codon tables have all entries. ... ok
test_number_of_tables (test_CodonTable.BasicSanityTests.test_number_of_tables)
Check if we have the same number of tables for each type. ... ok
test_ambiguous_forward_table (test_CodonTable.ErrorConditions.test_ambiguous_forward_table)
Raise errors in AmbiguousForwardTable. ... ok
test_list_possible_proteins (test_CodonTable.ErrorConditions.test_list_possible_proteins)
Raise errors in list_possible proteins. ... ok
test_print_table (test_CodonTable.PrintTable.test_print_table)
Test output of __str__ function. ... ok
test_table01 (test_CodonTable.SingleTableTests.test_table01)
Check table 1: Standard. ... ok
test_table02 (test_CodonTable.SingleTableTests.test_table02)
Check table 2: Vertebrate Mitochondrial. ... ok
test_table03 (test_CodonTable.SingleTableTests.test_table03)
Check table 3: Yeast Mitochondrial. ... ok
test_table04 (test_CodonTable.SingleTableTests.test_table04)
Check table 4: Mold Mitochondrial and others. ... ok
test_table05 (test_CodonTable.SingleTableTests.test_table05)
Check table 5: Invertebrate Mitochondrial. ... ok
test_table06 (test_CodonTable.SingleTableTests.test_table06)
Check table 6: Ciliate and Other Nuclear. ... ok
test_table09 (test_CodonTable.SingleTableTests.test_table09)
Check table 9: Echinoderm and Flatworm Mitochondrial. ... ok
test_table10 (test_CodonTable.SingleTableTests.test_table10)
Check table 10: Euplotid Nuclear. ... ok
test_table11 (test_CodonTable.SingleTableTests.test_table11)
Check table 11: Bacterial, Archaeal and Plant Plastid. ... ok
test_table12 (test_CodonTable.SingleTableTests.test_table12)
Check table 12: Alternative Yeast Nuclear. ... ok
test_table13 (test_CodonTable.SingleTableTests.test_table13)
Check table 13: Ascidian Mitochondrial. ... ok
test_table14 (test_CodonTable.SingleTableTests.test_table14)
Check table 14: Alternative Flatworm Mitochondrial. ... ok
test_table16 (test_CodonTable.SingleTableTests.test_table16)
Check table 16: Chlorophycean Mitochondrial. ... ok
test_table21 (test_CodonTable.SingleTableTests.test_table21)
Check table 21: Trematode Mitochondrial. ... ok
test_table22 (test_CodonTable.SingleTableTests.test_table22)
Check table 22: Scenedesmus obliquus Mitochondrial. ... ok
test_table23 (test_CodonTable.SingleTableTests.test_table23)
Check table 9: Thraustochytrium Mitochondrial. ... ok
test_table24 (test_CodonTable.SingleTableTests.test_table24)
Check table 24: Pterobranchia Mitochondrial. ... ok
test_table25 (test_CodonTable.SingleTableTests.test_table25)
Check table 25: Candidate Division SR1 and Gracilibacteria. ... ok
test_table26 (test_CodonTable.SingleTableTests.test_table26)
Check table 26: Pachysolen tannophilus Nuclear. ... ok
test_table27 (test_CodonTable.SingleTableTests.test_table27)
Check table 27: Karyorelict Nuclear. ... ok
test_table28 (test_CodonTable.SingleTableTests.test_table28)
Check table 28: Condylostoma Nuclear. ... ok
test_table29 (test_CodonTable.SingleTableTests.test_table29)
Check table 29: Mesodinium Nuclear. ... ok
test_table30 (test_CodonTable.SingleTableTests.test_table30)
Check table 30: Peritrich Nuclear. ... ok
test_table31 (test_CodonTable.SingleTableTests.test_table31)
Check table 31: Blastocrithidia Nuclear. ... ok
test_table32 (test_CodonTable.SingleTableTests.test_table32)
Check table 32: Balanophoraceae Plastid. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.053 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_ColorSpiral.py
test_ColorSpiral ... ok
test_dict (test_ColorSpiral.DictTest.test_dict)
get_color_dict() for classes A-D, no jitter. ... ok
test_colorlist (test_ColorSpiral.SpiralTest.test_colorlist)
Get set of eight colours, no jitter, using ColorSpiral. ... ok
test_colorspiral (test_ColorSpiral.SpiralTest.test_colorspiral)
Get set of 16 colours, no jitter, using ColorSpiral. ... ok
test_colorspiral (test_ColorSpiral.SquareTest.test_colorspiral)
Set of 625 colours, with jitter, using get_colors(). ... ok
----------------------------------------------------------------------
Ran 1 test in 0.068 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Compass.py
test_Compass ... ok
testAlignmentParsingOne (test_Compass.CompassTest.testAlignmentParsingOne) ... ok
testAlignmentParsingTwo (test_Compass.CompassTest.testAlignmentParsingTwo) ... ok
testCompassIteratorEasy (test_Compass.CompassTest.testCompassIteratorEasy) ... ok
testCompassIteratorHard (test_Compass.CompassTest.testCompassIteratorHard) ... ok
testCompassParser (test_Compass.CompassTest.testCompassParser) ... ok
testCompassScanAndConsume (test_Compass.CompassTest.testCompassScanAndConsume) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.017 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Consensus.py
test_Consensus ... ok
test_bitstring (test_Consensus.BitStringTest.test_bitstring) ... ok
test_bootstrap (test_Consensus.BootstrapTest.test_bootstrap) ... ok
test_bootstrap_consensus (test_Consensus.BootstrapTest.test_bootstrap_consensus) ... ok
test_bootstrap_consensus_msa (test_Consensus.BootstrapTest.test_bootstrap_consensus_msa) ... ok
test_bootstrap_trees (test_Consensus.BootstrapTest.test_bootstrap_trees) ... ok
test_bootstrap_trees_msa (test_Consensus.BootstrapTest.test_bootstrap_trees_msa) ... ok
test_adam_consensus (test_Consensus.ConsensusTest.test_adam_consensus) ... ok
test_count_clades (test_Consensus.ConsensusTest.test_count_clades) ... ok
test_get_support (test_Consensus.ConsensusTest.test_get_support) ... ok
test_majority_consensus (test_Consensus.ConsensusTest.test_majority_consensus) ... ok
test_strict_consensus (test_Consensus.ConsensusTest.test_strict_consensus) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.304 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Dialign_tool.py
test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.064 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_EMBL_unittest.py
test_EMBL_unittest ... ok
test_embl_0_line (test_EMBL_unittest.EMBLTests.test_embl_0_line)
Test SQ line with 0 length sequence. ... ok
test_embl_content_after_co (test_EMBL_unittest.EMBLTests.test_embl_content_after_co)
Test a ValueError is thrown by content after a CO line. ... ok
test_embl_no_coords (test_EMBL_unittest.EMBLTests.test_embl_no_coords)
Test sequence lines without coordinates. ... ok
test_embl_wrong_dr_line (test_EMBL_unittest.EMBLTests.test_embl_wrong_dr_line)
Test files with wrong DR lines. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.080 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Emboss.py
test_Emboss ... skipping. Install EMBOSS if you want to use Bio.Emboss.
----------------------------------------------------------------------
Ran 1 test in 0.122 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_EmbossPhylipNew.py
test_EmbossPhylipNew ... skipping. Install the Emboss package 'PhylipNew' if you want to use the Bio.Emboss.Applications wrappers for phylogenetic tools.
----------------------------------------------------------------------
Ran 1 test in 0.103 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_EmbossPrimer.py
test_EmbossPrimer ... ok
test_in_depth_single_parse (test_EmbossPrimer.Primer3ParseTest.test_in_depth_single_parse)
Make sure we get info right from a single primer find. ... ok
test_indepth_regular_parse (test_EmbossPrimer.Primer3ParseTest.test_indepth_regular_parse)
Make sure we get the data from normal primer3 files okay. ... ok
test_internal_oligo_single_parse (test_EmbossPrimer.Primer3ParseTest.test_internal_oligo_single_parse)
Make sure we can parse an internal oligo file correctly. ... ok
test_multi_record_full (test_EmbossPrimer.Primer3ParseTest.test_multi_record_full)
Test parsing multiple primer sets (NirK full). ... ok
test_multi_record_fwd (test_EmbossPrimer.Primer3ParseTest.test_multi_record_fwd)
Test parsing multiple primer sets (NirK forward). ... ok
test_simple_parse (test_EmbossPrimer.Primer3ParseTest.test_simple_parse)
Make sure that we can use all single target primer3 files. ... ok
test_primer_representation (test_EmbossPrimer.PrimerSearchInputTest.test_primer_representation)
Make sure we can output primer information correctly. ... ok
test_in_depth_normal_parse (test_EmbossPrimer.PrimersearchParseTest.test_in_depth_normal_parse)
Make sure the output from a simple primersearch file is correct. ... ok
test_simple_parse (test_EmbossPrimer.PrimersearchParseTest.test_simple_parse)
Make sure that we can parse all primersearch files. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.023 seconds
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf | grep -v SearchIO_blast | grep -v pairwise_aligner | grep -v SubsMat`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Entrez.py
test_Entrez ... /builddir/build/BUILDROOT/python-biopython-1.82-0.1.20230615gitbe9f39d.fc39.aarch64/usr/lib64/python3.12/site-packages/Bio/Entrez/__init__.py:694: UserWarning: 
            Email address is not specified.
            To make use of NCBI's E-utilities, NCBI requires you to specify your
            email address with each request.  As an example, if your email address
            is A.N.Other@example.com, you can specify it as follows:
               from Bio import Entrez
               Entrez.email = 'A.N.Other@example.com'
            In case of excessive usage of the E-utilities, NCBI will attempt to contact
            a user at the email address provided before blocking access to the
            E-utilities.
  warnings.warn(
FAIL
test_custom_directory (test_Entrez.CustomDirectoryTest.test_custom_directory) ... ok
test_construct_cgi_ecitmatch (test_Entrez.TestURLConstruction.test_construct_cgi_ecitmatch) ... ok
test_construct_cgi_efetch (test_Entrez.TestURLConstruction.test_construct_cgi_efetch) ... ok
test_construct_cgi_einfo (test_Entrez.TestURLConstruction.test_construct_cgi_einfo)
Test constructed url for request to Entrez. ... ok
test_construct_cgi_elink1 (test_Entrez.TestURLConstruction.test_construct_cgi_elink1) ... ok
test_construct_cgi_elink2 (test_Entrez.TestURLConstruction.test_construct_cgi_elink2)
Commas: Link from protein to gene. ... ok
test_construct_cgi_elink3 (test_Entrez.TestURLConstruction.test_construct_cgi_elink3)
Multiple ID entries: Find one-to-one links from protein to gene. ... ok
test_construct_cgi_epost1 (test_Entrez.TestURLConstruction.test_construct_cgi_epost1) ... ok
test_construct_cgi_epost2 (test_Entrez.TestURLConstruction.test_construct_cgi_epost2) ... ERROR
test_default_params (test_Entrez.TestURLConstruction.test_default_params)
Test overriding default values for the "email", "api_key", and "tool" parameters. ... ok
test_email_warning (test_Entrez.TestURLConstruction.test_email_warning)
Test issuing warning when user does not specify email address. ... ok
test_format_ids (test_Entrez.TestURLConstruction.test_format_ids) ... ok
test_has_api_key (test_Entrez.TestURLConstruction.test_has_api_key)
Test checking whether a Request object specifies an API key. ... ok
======================================================================
ERROR: test_construct_cgi_epost2 (test_Entrez.TestURLConstruction.test_construct_cgi_epost2)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/builddir/build/BUILD/biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426/Tests/test_Entrez.py", line 212, in test_construct_cgi_epost2
    check_request_ids(self, query, variables["id"])
  File "/builddir/build/BUILD/biopython-be9f39d56d55d3f93c113cc20d2971bd91f84426/Tests/test_Entrez.py", line 129, in check_request_ids
    testcase.assertEquals(len(params["id"]), 1)
    ^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'TestURLConstruction' object has no attribute 'assertEquals'. Did you mean: 'assertEqual'?
----------------------------------------------------------------------
Ran 1 test in 4.165 seconds
FAILED (failures = 1)
Skipping any tests requiring internet access
Python version: 3.12.0b2 (main, Jun 13 2023, 00:00:00) [GCC 13.1.1 20230511 (Red Hat 13.1.1-2)]
Operating system: posix linux
RPM build errors:
error: Bad exit status from /var/tmp/rpm-tmp.sq2npR (%check)
    Bad exit status from /var/tmp/rpm-tmp.sq2npR (%check)
Child return code was: 1
EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M 3212c69cd1d7481e924b89c34bac0474 -D /var/lib/mock/f39-python-43516244-5227553/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007" --setenv=PS1=<mock-chroot> \\s-\\v\\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec\n', 1)]
Traceback (most recent call last):
  File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace
    result = func(*args, **kw)
             ^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status
    raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
mockbuild.exception.Error: Command failed: 
 # /usr/bin/systemd-nspawn -q -M 3212c69cd1d7481e924b89c34bac0474 -D /var/lib/mock/f39-python-43516244-5227553/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.xm38ybiu:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007" --setenv=PS1=<mock-chroot> \s-\v\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec