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391 Open 1,007 Closed
391 Open 1,007 Closed
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Issues list

Biopython 1.79 Fails to parse new Uniprot file in SwissProt text format
#4021 opened Aug 4, 2022 by avivrosenberg
2
Missing cealign module
#4019 opened Aug 3, 2022 by totucuong
2
Inconsistency in keeping square brackets from node comments from phylogenetic trees (Nexus VS Phylo)
#4009 opened Jul 29, 2022 by Gullumluvl
Make relative accessibility normalization scales broadly accessible Enhancement good first issue This should be an easy fix, suitable for beginners help wanted
#4003 opened Jul 27, 2022 by JoaoRodrigues
X.molecular_weight()
#4002 opened Jul 27, 2022 by pauljmclaughlin
9
Error in using Phylo.convert
#4001 opened Jul 27, 2022 by ARise-fox
3
Add third-party tools to CI Enhancement Testing
#4000 opened Jul 26, 2022 by JoaoRodrigues
1 task
Add option to silence/capture stdout/stderr from Bio.PDB.PSEA Enhancement good first issue This should be an easy fix, suitable for beginners
#3999 opened Jul 26, 2022 by JoaoRodrigues
1
Is it possible to access archived genome assemblies?
#3993 opened Jul 22, 2022 by TeodoraTockovska
3
PairwiseAligner behavior mismatch versus documentation for 1.79
#3991 opened Jul 19, 2022 by ressy
2
Access to Alphafold database of 3D modules in a PDBList-like interface Enhancement good first issue This should be an easy fix, suitable for beginners help wanted
#3990 opened Jul 18, 2022 by JoaoRodrigues
Update argument handling in PDBList.py, possibly by creating a new module. Enhancement good first issue This should be an easy fix, suitable for beginners help wanted
#3989 opened Jul 18, 2022 by JoaoRodrigues
Extend PDBList obsolete handling to mmCIF and mmtf formats as well as assemblies Bug Enhancement good first issue This should be an easy fix, suitable for beginners help wanted
#3988 opened Jul 18, 2022 by JoaoRodrigues
1
Fix PDBList access to servers other than RCSB Bug good first issue This should be an easy fix, suitable for beginners help wanted
#3987 opened Jul 18, 2022 by JoaoRodrigues
1
Make it possible for SnapGeneIO to parse .rna files
#3982 opened Jul 14, 2022 by valentin994
pre-commit.ci time outs (just over 3m) Style Testing
#3958 opened Jun 17, 2022 by peterjc
1
15
MAF get_spliced does not retain coordinates
#3949 opened Jun 13, 2022 by iminkin
6
Trouble subclassing Bio.PDB.Residue.Residue
#3945 opened Jun 9, 2022 by eloyvallinaes
2
CI issues @github-actions CI / test_windows (3.9) (pull_request) Failing after 5m — test_windows (3.9)
#3944 opened Jun 6, 2022 by rob-miller
23
can't fetching some articles with pmc ids
#3941 opened May 26, 2022 by Hilal-Urun
3
http.client.IncompleteRead: IncompleteRead(0 bytes read)
#3940 opened May 25, 2022 by phage-GP
2
Proteins API Integration
#3930 opened May 14, 2022 by valentin994
1
Circular import error when importing Bio.Align in AWS Lambda
#3921 opened May 6, 2022 by guzmanvig
8
Support for Leon compressed fasta/fastq file formats
#3918 opened May 2, 2022 by jdvne
1
2
How to make gbf file
#3905 opened Apr 12, 2022 by cn6659
3
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