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Octocat-spinner-32 Abi added tests for SeqIO.Abi August 03, 2011
Octocat-spinner-32 Ace Added a sample 'new' (post 1998) ACE file from the CONSED documentati… June 17, 2008
Octocat-spinner-32 BioSQL
Octocat-spinner-32 Blast
Octocat-spinner-32 Clustalw Fixing Bio.Clustalw when parsing non-standard header lines, and addin… August 07, 2008
Octocat-spinner-32 CodonUsage Removing Mac OS hidden meta data file March 20, 2009
Octocat-spinner-32 Compass Added Compass parsing code contributed by James Casbon. May 05, 2004
Octocat-spinner-32 EMBL
Octocat-spinner-32 Emboss
Octocat-spinner-32 Entrez
Octocat-spinner-32 Enzymes Updating these files with the latest version from ExPASy. March 25, 2009
Octocat-spinner-32 ExtendedPhylip Update tests for extended phylip format June 18, 2011
Octocat-spinner-32 FSSP ---------------------------------------------------------------------- June 07, 2001
Octocat-spinner-32 Fasta
Octocat-spinner-32 GFF Support files for test_GFF December 03, 2002
Octocat-spinner-32 GenBank
Octocat-spinner-32 Geo Updating the input files Tests/geo/soft_ex_*.txt; adding soft_ex_affy… January 21, 2008
Octocat-spinner-32 Graphics Stop annoying cvs update messages for files that are not kept in repo… March 01, 2004
Octocat-spinner-32 IntelliGenetics TAT_mase-nuc.txt is an unused identical copy of TAT_mase_nuc.txt (whi… July 04, 2008
Octocat-spinner-32 KEGG
Octocat-spinner-32 MEME Test files for the MEME contingency tests. Contributed by Jason Hackney March 29, 2005
Octocat-spinner-32 Medline Add two files in Medline format to be used for the Bio.Medline unit t… August 02, 2008
Octocat-spinner-32 MetaTool Remove unused files. July 16, 2008
Octocat-spinner-32 Motif
Octocat-spinner-32 NBRF Fix NBRF/PIR parsing so that is accepts files produced by Clustalw --… March 02, 2004
Octocat-spinner-32 NeuralNetwork Stop annoying cvs update messages for files that are not kept in repo… March 01, 2004
Octocat-spinner-32 Nexus
Octocat-spinner-32 PAML
Octocat-spinner-32 PDB
Octocat-spinner-32 Phd Adding 454 and Solexa derived PHD files from the Consed author David … July 02, 2009
Octocat-spinner-32 Phylip Added sequential Phylip test cases and updated test_AlignIO.py accord… December 08, 2011
Octocat-spinner-32 PhyloXML Removed ncbi_taxonomy_mollusca from Phylo unittest July 12, 2010
Octocat-spinner-32 PopGen
Octocat-spinner-32 Prosite Adding part of the prosite.doc file, which is used in the Prodoc tests. March 16, 2009
Octocat-spinner-32 Quality
Octocat-spinner-32 Rebase *** empty log message *** September 07, 2000
Octocat-spinner-32 Registry updated dbdefs definitions September 22, 2002
Octocat-spinner-32 Roche
Octocat-spinner-32 SCOP Cleaning up the SCOP tests January 25, 2010
Octocat-spinner-32 Saf *** empty log message *** May 14, 2002
Octocat-spinner-32 SamBam
Octocat-spinner-32 SeqXML Forgot to add SeqXML file from Thomas July 14, 2011
Octocat-spinner-32 Stockholm Add sequence to funny.sth; update tests January 30, 2012
Octocat-spinner-32 SubsMat 15 Nov 00 Brad November 15, 2000
Octocat-spinner-32 SwissProt
Octocat-spinner-32 UniGene Updating the UniGene parser to be consistent with current UniGene files. April 24, 2009
Octocat-spinner-32 Wise Adding Bio.Wise to the distribution January 15, 2004
Octocat-spinner-32 output
Octocat-spinner-32 .cvsignore Get CVS to ignore *.pyc files in the Test directory March 05, 2004
Octocat-spinner-32 requires_internet.py
Octocat-spinner-32 requires_wise.py
Octocat-spinner-32 run_tests.py
Octocat-spinner-32 seq_tests_common.py
Octocat-spinner-32 setup_BioSQL.py
Octocat-spinner-32 test_Ace.py
Octocat-spinner-32 test_AlignIO.py
Octocat-spinner-32 test_AlignIO_FastaIO.py
Octocat-spinner-32 test_AlignIO_convert.py
Octocat-spinner-32 test_BioSQL.py
Octocat-spinner-32 test_BioSQL_SeqIO.py
Octocat-spinner-32 test_CAPS.py
Octocat-spinner-32 test_Chi2.py
Octocat-spinner-32 test_ClustalOmega_tool.py
Octocat-spinner-32 test_Clustalw_tool.py
Octocat-spinner-32 test_Cluster.py
Octocat-spinner-32 test_CodonTable.py
Octocat-spinner-32 test_CodonUsage.py
Octocat-spinner-32 test_Compass.py
Octocat-spinner-32 test_Crystal.py
Octocat-spinner-32 test_Dialign_tool.py
Octocat-spinner-32 test_DocSQL.py
Octocat-spinner-32 test_Emboss.py
Octocat-spinner-32 test_EmbossPhylipNew.py
Octocat-spinner-32 test_EmbossPrimer.py
Octocat-spinner-32 test_Entrez.py
Octocat-spinner-32 test_Enzyme.py Fix more unit tests which were not closing handles December 26, 2010
Octocat-spinner-32 test_FSSP.py
Octocat-spinner-32 test_File.py
Octocat-spinner-32 test_GACrossover.py
Octocat-spinner-32 test_GAMutation.py
Octocat-spinner-32 test_GAOrganism.py
Octocat-spinner-32 test_GAQueens.py
Octocat-spinner-32 test_GARepair.py
Octocat-spinner-32 test_GASelection.py
Octocat-spinner-32 test_GenBank.py
Octocat-spinner-32 test_GenomeDiagram.py
Octocat-spinner-32 test_GraphicsBitmaps.py
Octocat-spinner-32 test_GraphicsChromosome.py
Octocat-spinner-32 test_GraphicsDistribution.py
Octocat-spinner-32 test_GraphicsGeneral.py
Octocat-spinner-32 test_HMMCasino.py
Octocat-spinner-32 test_HMMGeneral.py
Octocat-spinner-32 test_HotRand.py
Octocat-spinner-32 test_IsoelectricPoint.py
Octocat-spinner-32 test_KDTree.py
Octocat-spinner-32 test_KEGG.py
Octocat-spinner-32 test_KeyWList.py
Octocat-spinner-32 test_Location.py
Octocat-spinner-32 test_LogisticRegression.py
Octocat-spinner-32 test_MMCIF.py
Octocat-spinner-32 test_Mafft_tool.py
Octocat-spinner-32 test_MarkovModel.py
Octocat-spinner-32 test_Medline.py
Octocat-spinner-32 test_Motif.py
Octocat-spinner-32 test_Muscle_tool.py
Octocat-spinner-32 test_NCBIStandalone.py
Octocat-spinner-32 test_NCBITextParser.py
Octocat-spinner-32 test_NCBIXML.py
Octocat-spinner-32 test_NCBI_BLAST_tools.py
Octocat-spinner-32 test_NCBI_qblast.py
Octocat-spinner-32 test_NNExclusiveOr.py
Octocat-spinner-32 test_NNGene.py
Octocat-spinner-32 test_NNGeneral.py
Octocat-spinner-32 test_Nexus.py
Octocat-spinner-32 test_PAML_baseml.py
Octocat-spinner-32 test_PAML_codeml.py
Octocat-spinner-32 test_PAML_tools.py
Octocat-spinner-32 test_PAML_yn00.py
Octocat-spinner-32 test_PDB.py
Octocat-spinner-32 test_PDB_KDTree.py
Octocat-spinner-32 test_ParserSupport.py
Octocat-spinner-32 test_Pathway.py
Octocat-spinner-32 test_Phd.py
Octocat-spinner-32 test_Phylo.py
Octocat-spinner-32 test_PhyloXML.py
Octocat-spinner-32 test_Phylo_depend.py
Octocat-spinner-32 test_PopGen_DFDist.py
Octocat-spinner-32 test_PopGen_FDist.py
Octocat-spinner-32 test_PopGen_FDist_nodepend.py
Octocat-spinner-32 test_PopGen_GenePop.py
Octocat-spinner-32 test_PopGen_GenePop_EasyController.py
Octocat-spinner-32 test_PopGen_GenePop_nodepend.py
Octocat-spinner-32 test_PopGen_SimCoal.py
Octocat-spinner-32 test_PopGen_SimCoal_nodepend.py Don't leave open handles (important on Jython on Windows) November 12, 2010
Octocat-spinner-32 test_Prank_tool.py
Octocat-spinner-32 test_Probcons_tool.py
Octocat-spinner-32 test_ProtParam.py
Octocat-spinner-32 test_Restriction.py
Octocat-spinner-32 test_SCOP_Astral.py
Octocat-spinner-32 test_SCOP_Cla.py
Octocat-spinner-32 test_SCOP_Des.py
Octocat-spinner-32 test_SCOP_Dom.py
Octocat-spinner-32 test_SCOP_Hie.py
Octocat-spinner-32 test_SCOP_Raf.py
Octocat-spinner-32 test_SCOP_Residues.py
Octocat-spinner-32 test_SCOP_Scop.py
Octocat-spinner-32 test_SCOP_online.py
Octocat-spinner-32 test_SVDSuperimposer.py
Octocat-spinner-32 test_SeqIO.py
Octocat-spinner-32 test_SeqIO_AbiIO.py
Octocat-spinner-32 test_SeqIO_FastaIO.py
Octocat-spinner-32 test_SeqIO_QualityIO.py
Octocat-spinner-32 test_SeqIO_SeqXML.py
Octocat-spinner-32 test_SeqIO_convert.py
Octocat-spinner-32 test_SeqIO_features.py
Octocat-spinner-32 test_SeqIO_index.py
Octocat-spinner-32 test_SeqIO_online.py
Octocat-spinner-32 test_SeqIO_write.py
Octocat-spinner-32 test_SeqRecord.py
Octocat-spinner-32 test_SeqUtils.py
Octocat-spinner-32 test_Seq_objs.py
Octocat-spinner-32 test_SffIO.py
Octocat-spinner-32 test_SubsMat.py
Octocat-spinner-32 test_SwissProt.py
Octocat-spinner-32 test_TCoffee_tool.py
Octocat-spinner-32 test_TogoWS.py
Octocat-spinner-32 test_Tutorial.py
Octocat-spinner-32 test_UniGene.py
Octocat-spinner-32 test_Uniprot.py
Octocat-spinner-32 test_Wise.py
Octocat-spinner-32 test_align.py
Octocat-spinner-32 test_bgzf.py
Octocat-spinner-32 test_geo.py
Octocat-spinner-32 test_kNN.py
Octocat-spinner-32 test_lowess.py
Octocat-spinner-32 test_pairwise2.py
Octocat-spinner-32 test_phyml_tool.py
Octocat-spinner-32 test_prodoc.py
Octocat-spinner-32 test_prosite1.py
Octocat-spinner-32 test_prosite2.py
Octocat-spinner-32 test_psw.py
Octocat-spinner-32 test_raxml_tool.py
Octocat-spinner-32 test_seq.py
Octocat-spinner-32 test_translate.py
Octocat-spinner-32 test_trie.py
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