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Affy Use USA spelling of initialise Jun 16, 2017
Align docstring work for Bio.Align Jun 16, 2017
AlignIO docstring work for Bio.AlignIO Jun 16, 2017
Alphabet More docstring work. Jun 16, 2017
Application docstring work for Bio.Application Jun 16, 2017
Blast More RST tweaks to docstrings, mostly argument bullet lists Jun 16, 2017
CAPS More docstring work. Jun 16, 2017
Cluster Fix some docstring indentation & blank lines for RST validation Jun 15, 2017
Compass autopep8 --in-place --select E305 Bio/*/*.py Apr 20, 2017
Crystal corrections for pydocstyle rule D204 May 7, 2017
Data corrections for pydocstyle rule D204 May 7, 2017
Emboss More RST tweaks to docstrings, mostly argument bullet lists Jun 16, 2017
Entrez Updated Bio.Entrez DTD file from NCBI Jun 22, 2017
ExPASy docstring work for Bio.ExPASy Jun 16, 2017
FSSP changes to comply with pydocstyle rule D210 May 8, 2017
GA docstring work for Bio.GA Jun 16, 2017
GenBank Use USA spelling of initialise Jun 16, 2017
Geo corrections for pydocstyle rule D204 May 7, 2017
Graphics Use USA spelling of initialise Jun 16, 2017
HMM Use USA spelling of initialise Jun 16, 2017
KDTree More docstring work. Jun 16, 2017
KEGG Use USA spelling of initialise Jun 16, 2017
Medline More RST tweaks to docstrings, mostly argument bullet lists Jun 16, 2017
NMR corrections for pydocstyle rule D204 May 7, 2017
NeuralNetwork Adding module level docstring saying deprecated. Jun 26, 2017
Nexus Fix some docstring indentation & blank lines for RST validation Jun 15, 2017
PDB Fix or make indentation consistent for RST bullet points Jun 22, 2017
Pathway Fix some docstring indentation & blank lines for RST validation Jun 15, 2017
Phylo More RST tweaks to docstrings, mostly argument bullet lists Jun 16, 2017
PopGen Fix some docstring indentation & blank lines for RST validation Jun 15, 2017
Restriction RST formatting docstrings in Restriction.py Jun 16, 2017
SCOP Use USA spelling of initialise Jun 16, 2017
SVDSuperimposer corrections for pydocstyle rule D204 May 7, 2017
SearchIO Update docstring for _hit_key_func Jun 9, 2017
SeqIO Fix or make indentation consistent for RST bullet points Jun 22, 2017
SeqUtils Fix or make indentation consistent for RST bullet points Jun 22, 2017
Sequencing Fix some docstring indentation & blank lines for RST validation Jun 15, 2017
Statistics pydocstyle work on Bio/Statistics/lowess.py Jun 9, 2017
SubsMat Use USA spelling of initialise Jun 16, 2017
SwissProt Fix or make indentation consistent for RST bullet points Jun 22, 2017
TogoWS Fix or make indentation consistent for RST bullet points Jun 22, 2017
UniGene Fix some docstring indentation & blank lines for RST validation Jun 15, 2017
UniProt Refactor doctest print to work on Jython 2.7 Apr 5, 2017
Wise autopep8 --in-place --select E305 Bio/*/*.py Apr 20, 2017
_py3k Remove EvilHandleHack now we've dropped Python 3.3 Jun 19, 2017
codonalign docstring work for Bio.codonalign Jun 16, 2017
motifs Update MEME parser (v4.11.4 support) Jun 20, 2017
phenotype Fix or make indentation consistent for RST bullet points Jun 22, 2017
.flake8 TravisCI/Tox/Flake8 - enable doctest checking Jun 21, 2017
DocSQL.py Avoid naked exceptions (keyboard interupt etc) May 26, 2017
File.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
Index.py corrections for pydocstyle rule D204 May 7, 2017
LogisticRegression.py corrections for pydocstyle rule D204 May 7, 2017
MarkovModel.py Update docstrings in MarkovModel.py May 16, 2017
MaxEntropy.py Add missing docstrings to MaxEntropy.py May 16, 2017
NaiveBayes.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
ParserSupport.py Use USA spelling of initialise Jun 16, 2017
Seq.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
SeqFeature.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
SeqRecord.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
__init__.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
_utils.py Fixes for pydocstyle rule D209 Apr 22, 2017
bgzf.py Add missing public docstrings to Bio.bgzf May 4, 2017
cpairwise2module.c Formatting (whitespace, tabs) issues in C module Jun 15, 2016
kNN.py Fix or make indentation consistent for RST bullet points Jun 22, 2017
pairwise2.py More RST tweaks to docstrings, mostly argument bullet lists Jun 16, 2017
trie.c Modified some vars from "int" to "unsigned int" to avoid compiler war… Jan 24, 2017
trie.h Trim EOL whitespace (PEP8 W291, W293). Dec 4, 2012
triefind.py pydocstyle rule D212 corrections May 4, 2017
triemodule.c Cope with large trie save/load Apr 11, 2017