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README.txt
exn_22_m_affine_local.exn
exn_22_m_cdna2genome.exn
exn_22_m_coding2coding.exn
exn_22_m_coding2coding_fshifts.exn
exn_22_m_coding2genome.exn
exn_22_m_dna2protein.exn
exn_22_m_est2genome.exn
exn_22_m_genome2genome.exn
exn_22_m_ner.exn
exn_22_m_protein2dna.exn
exn_22_m_protein2dna_fshifts.exn
exn_22_m_protein2genome.exn
exn_22_m_ungapped.exn
exn_22_m_ungapped_trans.exn
exn_22_o_vulgar.exn
exn_22_o_vulgar_cigar.exn
exn_22_o_vulgar_fshifts.exn
exn_22_o_vulgar_fshifts2.exn
exn_22_q_multiple.exn
exn_22_q_multiple_vulgar.exn
exn_22_q_none.exn

README.txt

EXONERATE TEST DATA FILES
=========================

This directory contains various data files for testing the
Exonerate-related code in Biopython. All files are grouped by
Exonerate release version, from the most recent first.


Exonerate 2.2
-------------
exn_22_m_affine_local.exn           affine:local model alignment
exn_22_m_cdna2genome.exn            cdna2genome model alignment
exn_22_m_coding2coding.exn          coding2coding model alignment
exn_22_m_coding2coding_fshifts.exn  coding2coding model alignment, with frameshifts
exn_22_m_coding2genome.exn          coding2genome model alignment
exn_22_m_dna2protein.exn            dna2protein model alignment
exn_22_m_est2genome.exn             est2genome model alignment
exn_22_m_genome2genome.exn          genome2genome model alignment
exn_22_m_ner.exn                    ner model alignment
exn_22_m_protein2dna.exn            protein2dna model alignment
exn_22_m_protein2dna_fshifts.exn    protein2dna model alignment, with frameshifts
exn_22_m_protein2genome.exn         protein2genome model alignment
exn_22_m_ungapped.exn               ungapped model alignment (default)
exn_22_m_ungapped_trans.exn         ungapped:translated model alignment

exn_22_o_vulgar_cigar.exn           genome2genome alignment with vulgar and cigar lines only
exn_22_o_vulgar.exn                 genome2genome alignment with vulgar lines only
exn_22_o_vulgar_fshifts.exn         coding2coding alignment with vulgar lines only, frameshifts
exn_22_o_vulgar_fshifts2.exn        protein2dna alignment with vulgar lines only, frameshifts

exn_22_q_multiple.exn               est2genome, multiple queries, multiple hits and hsps
exn_22_q_multiple_vulgar.exn        est2genome, multiple queries, multiple hits and hsps, vulgar lines only
exn_22_q_empty.exn                  est2genome, single query, no results