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update documentation

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1 parent cccb1f4 commit d0805015071ec4a74e4e85bf894f66e9577fafec @georgeG georgeG committed May 21, 2012
Showing with 13 additions and 1 deletion.
  1. +13 −1 README.rdoc
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@@ -39,7 +39,6 @@ install the gem. This will install the bioruby gem if it is not already installe
#get the cyspolv group for this tag
puts dbl_seq.cyspolv_group #=> 1
-
#get the block sharing group for this tag
puts dbl_seq.bs_group #=> 1
@@ -70,6 +69,19 @@ window length is 14
#get pspb4
puts seq.pspb4 #=> FTSHGKCGRNETNV
+ #get a pspb as an amino acid
+ puts seq.pspb4_as_dna
+
+= Finding polv2 to polv3 regions
+ Only the Amino acid regions are supported for now
+
+ #get polv1 to polv2 region
+ puts seq.polv1_to_polv2
+
+ #get polv3 to polv4 region
+ puts seq.polv3_to_polv4
+
+
= Processing a flatfile for example fasta, genbank or embl
seq_file = "sequences.fasta"

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