Permalink
Browse files

* updated for release 0.3.8

  • Loading branch information...
1 parent eb01384 commit 15d1e6a73cbf50925eeeca240f2133e38e4fcd79 @ktym ktym committed Jun 26, 2002
Showing with 31 additions and 3 deletions.
  1. +31 −3 ChangeLog
View
@@ -1,7 +1,35 @@
+2002-06-26 KATAYAMA Toshiaki <k@bioruby.org>
+
+ * BioRuby version 0.3.8 released.
+ * lib/bio/sequence.rb:
+ * normalize! method added for clean up the object itself.
+ * 'to_seq' method was renamed to 'seq' (!)
+ * to_xxxx should be used when the class of the object changes.
+ * lib/bio/appl/blast/xmparser.rb:
+ * each_iteration, each_hit, each, hits, statistics, message methods
+ are added in Report class.
+ * statistics, message methods are added in Iteration class.
+ * methods compatible with Fasta::Report::Hit are added in Hit class.
+ * lib/bio/appl/blast/rexml.rb:
+ * many APIs were changed to follow the xmlparser.rb's. (!)
+ * lib/bio/appl/{blast.rb,fasta.rb]:
+ * class method parser() is added for loading specified Report class.
+ * etc/bioinformatics/seqdatabase.ini: added for OBDA (!)
+ * sample setup for BioRegistry - Open Bio Sequence Database Access.
+ * lib/bio/extend.rb: added (!)
+ * This module adds some functionarity to the existing classes and
+ not loaded by default. User should require specifically if needed.
+ * lib/bio/util/*: removed and merged into lib/bio/extend.rb (!)
+ * lib/bio/id.rb: removed (!)
+ * lib/bio/db/{embl.rb,sptr.rb,transfac.rb}: added entry_id
+ * lib/bio/data/keggorg.rb: updated
+ * sample/genes2* sample/genome2*: updated
+ * doc/Tutrial.rd.ja: updated
+
2002-06-19 KATAYAMA Toshiaki <k@bioruby.org>
* BioRuby version 0.3.7 released.
- * lib/bio/sequence.rb: Sequence inherits String again (!!!)
+ * lib/bio/sequence.rb: Sequence inherits String again (!)
* lib/bio/db.rb, db/embl.rb, db/sptr.rb: moved EMBL specific methods
2002-06-18 KATAYAMA Toshiaki <k@bioruby.org>
@@ -11,10 +39,10 @@
2002-05-28 KATAYAMA Toshiaki <k@bioruby.org>
- * lib/bio/appl/fasta.rb: parser separated, API renewal (!!!)
+ * lib/bio/appl/fasta.rb: parser separated, API renewal (!)
* lib/bio/appl/fasta/format10.rb: moved from fasta.rb
- * lib/bio/appl/blast.rb: parser separated, API renewal (!!!)
+ * lib/bio/appl/blast.rb: parser separated, API renewal (!)
* lib/bio/appl/blast/format8.rb: newly added
* lib/bio/appl/blast/rexml.rb: newly added
* lib/bio/appl/blast/xmlparser.rb: moved from blast.rb

0 comments on commit 15d1e6a

Please sign in to comment.