diff --git a/bin/bioruby b/bin/bioruby index 5206fc1be..7c8100c60 100755 --- a/bin/bioruby +++ b/bin/bioruby @@ -4,9 +4,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: bioruby,v 1.5 2005/11/06 01:28:44 k Exp $ +# $Id: bioruby,v 1.6 2005/11/14 02:01:53 k Exp $ # #-- # diff --git a/lib/bio/data/aa.rb b/lib/bio/data/aa.rb index 40c6ee852..d70cee70b 100644 --- a/lib/bio/data/aa.rb +++ b/lib/bio/data/aa.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2001, 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: aa.rb,v 0.13 2005/11/04 17:49:10 k Exp $ +# $Id: aa.rb,v 0.14 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/data/codontable.rb b/lib/bio/data/codontable.rb index 9397b411c..41c3e3cab 100644 --- a/lib/bio/data/codontable.rb +++ b/lib/bio/data/codontable.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2001, 2004 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: codontable.rb,v 0.14 2005/11/05 08:25:47 k Exp $ +# $Id: codontable.rb,v 0.15 2005/11/14 02:01:54 k Exp $ # # == Data source # diff --git a/lib/bio/io/das.rb b/lib/bio/io/das.rb index 87a2171e6..90291e562 100644 --- a/lib/bio/io/das.rb +++ b/lib/bio/io/das.rb @@ -4,9 +4,9 @@ # Copyright:: Copyright (C) 2003, 2004 # Shuichi Kawashima , # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: das.rb,v 1.10 2005/11/05 08:31:26 k Exp $ +# $Id: das.rb,v 1.11 2005/11/14 02:01:54 k Exp $ # #-- # == TODO diff --git a/lib/bio/io/ddbjxml.rb b/lib/bio/io/ddbjxml.rb index 3a1970181..038f9f702 100644 --- a/lib/bio/io/ddbjxml.rb +++ b/lib/bio/io/ddbjxml.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2003, 2004 # KATAYAMA Toshiaki -# Lisence:: LGPL +# License:: LGPL # -# $Id: ddbjxml.rb,v 1.7 2005/11/05 08:33:01 k Exp $ +# $Id: ddbjxml.rb,v 1.8 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell.rb b/lib/bio/shell.rb index 080184d41..cd1f5194d 100644 --- a/lib/bio/shell.rb +++ b/lib/bio/shell.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: shell.rb,v 1.6 2005/11/06 01:29:27 k Exp $ +# $Id: shell.rb,v 1.7 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell/core.rb b/lib/bio/shell/core.rb index d67231db8..c8a2e6f81 100644 --- a/lib/bio/shell/core.rb +++ b/lib/bio/shell/core.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: core.rb,v 1.6 2005/11/06 18:30:04 k Exp $ +# $Id: core.rb,v 1.7 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell/interface.rb b/lib/bio/shell/interface.rb index 81c6a1782..a12dd544e 100644 --- a/lib/bio/shell/interface.rb +++ b/lib/bio/shell/interface.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: interface.rb,v 1.4 2005/11/06 18:28:48 k Exp $ +# $Id: interface.rb,v 1.5 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell/plugin/codon.rb b/lib/bio/shell/plugin/codon.rb index 3b739cfd5..41c286984 100644 --- a/lib/bio/shell/plugin/codon.rb +++ b/lib/bio/shell/plugin/codon.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: codon.rb,v 1.2 2005/11/05 11:54:35 k Exp $ +# $Id: codon.rb,v 1.3 2005/11/14 02:01:54 k Exp $ # #-- # @@ -187,7 +187,7 @@ def nucleicacids [ 'w', '[at]', 'Weak' ], [ 's', '[gc]', 'Strong' ], [ 'k', '[tg]', 'Keto' ], - [ 'm', '[ac]', 'aMino' ], + [ 'm', '[ac]', 'aroMatic' ], [ 'b', '[tgc]', 'not A' ], [ 'v', '[agc]', 'not T' ], [ 'h', '[atc]', 'not G' ], diff --git a/lib/bio/shell/plugin/flatfile.rb b/lib/bio/shell/plugin/flatfile.rb index 43ac2def6..7e64a9d00 100644 --- a/lib/bio/shell/plugin/flatfile.rb +++ b/lib/bio/shell/plugin/flatfile.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: flatfile.rb,v 1.4 2005/11/05 08:36:24 k Exp $ +# $Id: flatfile.rb,v 1.5 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell/plugin/keggapi.rb b/lib/bio/shell/plugin/keggapi.rb index 62be2d136..b4e0199f4 100644 --- a/lib/bio/shell/plugin/keggapi.rb +++ b/lib/bio/shell/plugin/keggapi.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: keggapi.rb,v 1.2 2005/11/06 02:12:03 k Exp $ +# $Id: keggapi.rb,v 1.3 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell/plugin/obda.rb b/lib/bio/shell/plugin/obda.rb index 939e853ea..ccd6e4073 100644 --- a/lib/bio/shell/plugin/obda.rb +++ b/lib/bio/shell/plugin/obda.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: obda.rb,v 1.2 2005/11/05 09:06:49 k Exp $ +# $Id: obda.rb,v 1.3 2005/11/14 02:01:54 k Exp $ # #-- # diff --git a/lib/bio/shell/plugin/seq.rb b/lib/bio/shell/plugin/seq.rb index e88eb0ca5..6c9e4d963 100644 --- a/lib/bio/shell/plugin/seq.rb +++ b/lib/bio/shell/plugin/seq.rb @@ -3,9 +3,9 @@ # # Copyright:: Copyright (C) 2005 # Toshiaki Katayama -# Lisence:: LGPL +# License:: LGPL # -# $Id: seq.rb,v 1.6 2005/11/06 03:03:08 k Exp $ +# $Id: seq.rb,v 1.7 2005/11/14 02:01:54 k Exp $ # #-- #