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Commits on Jul 1, 2015
  1. @ngoto

    BioRuby 1.5.0 is released

    ngoto authored
Commits on Jun 30, 2015
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    prepare to release BioRuby 1.5.0

    ngoto authored
  12. @ngoto

    RELEASE_NOTES.rdoc: update many

    ngoto authored
  13. @ngoto

    Bug fix: Bio::UniProtKB#gene_name should not raise NoMethodError

    ngoto authored
     * Bug fix: Bio::UniProtKB#gene_name raised NoMethodError when
       gene_names method returns nil. It should return nil.
       Thanks to Jose Irizarry who reports and sends suggested fix.
       (#83 )
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    delete description about SOAP4R

    ngoto authored
Commits on Jun 29, 2015
  1. @ngoto

    .travis.yml: test/unit no longer bundled with Ruby 2.2

    ngoto authored
     * For Ruby 2.2, use a new Gemfile named Gemfile.travis-ruby2.2
       that include 'gem "test-unit"' line because test/unit have been
       provided by bundled gem since Ruby 2.2.
  2. @ngoto

    bump up version to 1.5.0-dev; simplify the versioning rules

    ngoto authored
     * Bump up version to 1.5.0-dev (1.5.0.20150630)
     * Simplify the versioning rules.
     * We will adopt the Semantic Versioning since BioRuby 1.5.1.
  3. @ngoto

    Bug fix: update Bio::Hinv::BASE_URI

    ngoto authored
     * Bug fix: update Bio::Hinv::BASE_URI to follow the server URI change.
     * Update official documentation URL.
  4. @ngoto

    delete $Id:$ line

    ngoto authored
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    deleted lib/bio/shell/plugin/soap.rb

    ngoto authored
     * deleted lib/bio/shell/plugin/soap.rb because Bio::SOAPWSDL and
       all SOAP client classes in BioRuby are removed.
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    remove Bio::EBI::SOAP (lib/bio/io/ebisoap.rb)

    ngoto authored
     * Bio::EBI::SOAP (lib/bio/io/ebisoap.rb) is removed because
       Bio::SOAPWSDL is removed.
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    remove Bio::SOAPWSDL (lib/bio/io/soapwsdl.rb) and tests

    ngoto authored
     * Bio::SOAPWSDL is removed because SOAP4R (SOAP/WSDL library in Ruby)
       is no longer bundled with Ruby since Ruby 1.9. For Ruby 1.9 or later,
       some gems of SOAP4R are available, but we think they are not
       well-maintained. Moreover, many SOAP servers have been retired
       (see previous commits). So, we give up maintaining Bio::SOAPWSDL.
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