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Commits on Jun 29, 2015
  1. @ngoto

    .travis.yml: test/unit no longer bundled with Ruby 2.2

    ngoto authored
     * For Ruby 2.2, use a new Gemfile named Gemfile.travis-ruby2.2
       that include 'gem "test-unit"' line because test/unit have been
       provided by bundled gem since Ruby 2.2.
  2. @ngoto

    bump up version to 1.5.0-dev; simplify the versioning rules

    ngoto authored
     * Bump up version to 1.5.0-dev (1.5.0.20150630)
     * Simplify the versioning rules.
     * We will adopt the Semantic Versioning since BioRuby 1.5.1.
  3. @ngoto

    Bug fix: update Bio::Hinv::BASE_URI

    ngoto authored
     * Bug fix: update Bio::Hinv::BASE_URI to follow the server URI change.
     * Update official documentation URL.
  4. @ngoto

    delete $Id:$ line

    ngoto authored
  5. @ngoto
  6. @ngoto
  7. @ngoto
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  9. @ngoto
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  11. @ngoto

    deleted lib/bio/shell/plugin/soap.rb

    ngoto authored
     * deleted lib/bio/shell/plugin/soap.rb because Bio::SOAPWSDL and
       all SOAP client classes in BioRuby are removed.
  12. @ngoto
  13. @ngoto

    remove Bio::EBI::SOAP (lib/bio/io/ebisoap.rb)

    ngoto authored
     * Bio::EBI::SOAP (lib/bio/io/ebisoap.rb) is removed because
       Bio::SOAPWSDL is removed.
  14. @ngoto
  15. @ngoto

    remove Bio::SOAPWSDL (lib/bio/io/soapwsdl.rb) and tests

    ngoto authored
     * Bio::SOAPWSDL is removed because SOAP4R (SOAP/WSDL library in Ruby)
       is no longer bundled with Ruby since Ruby 1.9. For Ruby 1.9 or later,
       some gems of SOAP4R are available, but we think they are not
       well-maintained. Moreover, many SOAP servers have been retired
       (see previous commits). So, we give up maintaining Bio::SOAPWSDL.
  16. @ngoto
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  18. @ngoto
Commits on Jun 26, 2015
  1. @ngoto
  2. @ngoto
Commits on Jun 25, 2015
  1. @ngoto

    extconf.rb is deleted because no native extensions are included

    ngoto authored
     * extconf.rb is deleted because no native extensions are included in
       BioRuby and to avoid potential confusions. Nowadays, extconf.rb is
       usually used only for building native extensions. Use gem or
       setup.rb to install BioRuby.
Commits on Jun 24, 2015
  1. @ngoto
Commits on May 1, 2015
  1. @ngoto

    s.license = "Ruby"

    ngoto authored
     * bioruby.gemspec.erb, bioruby.gemspec: s.license = "Ruby"
       Thanks to Peter Cock who reports a patch.
       (#101 )
  2. @ngoto
Commits on Mar 27, 2015
  1. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  2. @ngoto
  3. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  4. @ngoto
  5. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  6. @ngoto
  7. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  8. @ngoto
  9. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  10. @ngoto
  11. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
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