Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with
or
.
Download ZIP
Commits on May 1, 2015
  1. @ngoto

    s.license = "Ruby"

    ngoto authored
     * bioruby.gemspec.erb, bioruby.gemspec: s.license = "Ruby"
       Thanks to Peter Cock who reports a patch.
       (#101 )
  2. @ngoto
Commits on Mar 27, 2015
  1. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  2. @ngoto
  3. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  4. @ngoto
  5. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  6. @ngoto
  7. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  8. @ngoto
  9. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  10. @ngoto
  11. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  12. @ngoto
  13. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  14. @ngoto

    suppress "warning: instance variable @tagsize not initialized"

    ngoto authored
     * test/unit/bio/test_db.rb: to suppress "warning: instance variable
       @tagsize not initialized" when executing Bio::TestDB#test_fetch,
       @tagsize is set in setup.
  15. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  16. @ngoto
  17. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  18. @ngoto
  19. @ngoto
  20. @ngoto
Commits on Mar 26, 2015
  1. @ngoto
Commits on Mar 25, 2015
  1. @ngoto
  2. @ngoto

    suppress "instance variable not initialized" warnings

    ngoto authored
     * suppress warning: instance variable @sc_match not initialized
     * suppress warning: instance variable @sc_mismatch not initialized
     * suppress warning: instance variable @gaps not initialized
     * suppress warning: instance variable @hit_frame not initialized
     * suppress warning: instance variable @query_frame not initialized
  3. @ngoto
  4. @ngoto
  5. @ngoto

    Incompatible Change: Bio::Command.make_cgi_params rejects single String

    ngoto authored
     * Incompatible Change: Bio::Command.make_cgi_params no longer accepts a
       single String as a form. Use Hash or Array containing key-value pairs
       as String objects. This change also affects Bio::Command.post_form
       and Bio::Command.http_post_form which internally use this method.
Commits on Mar 24, 2015
  1. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  2. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  3. @ngoto

    delete obsolete $Id:$ line

    ngoto authored
  4. @ngoto
  5. @ngoto
  6. @ngoto

    Bug fix: search with offset did not work due to TogoWS server change

    ngoto authored
     * lib/bio/io/togows.rb: Bug fix: Bio::TogoWS::REST#search with offset
       and limit did not work due to TogoWS server change about URI escape.
       For example,
       http://togows.org/search/nuccore/Milnesium+tardigradum/2%2C3 fails,
       http://togows.org/search/nuccore/Milnesium+tardigradum/2,3 works fine.
  7. @ngoto

    Bug fix due to TogoWS convert method spec change

    ngoto authored
     * lib/bio/io/togows.rb: Bug fix: Bio::TogoWS::REST#convert did not work
       because of the spec change of TogoWS REST API.
Something went wrong with that request. Please try again.