A repository for code and documentation of the BioQuery BETA system.
Use and License
Here data and code-source are licensed under the CC0 1.0 Universal (CC0 1.0). A human-readable version and explanation is available at the Creative Commons website. For information about how to properly credit data use, please review the Creative Commons FAQ or contact us.
Relational-to-RDF (OBDA) mappings
The full set of Ontop mappings used to expose relational Bgee data as a virtual RDF graph is available in the Bgee_OBDA_mappings folder.
Federated Queries Catalog
The Excel spreadsheet containing the 12 federated queries used to evaluate our system are available in the Queries folder. They can also be modified and executed in our template-based search interface at http://biosoda.expasy.org/build_biosodafrontend/ .
The documentation for the GenEx semantic model, used to expose gene expression data from Bgee as a virtual RDF graph, is available at GenEx documentation draft and the raw files in the genex repository.
VoID extension documentation
The documentation of the VoID extension describing the virtual links between the datasets considered in our work is available at VoIDext documentation draft and the Turtle files in the voidext repository by also including the metadata used in this project (i.e. voidext_bioquery.ttl file).
All supplementary material for the submission is available in the document in Supplementary.