DTU Biosustain

Repositories

• Maud

  Enzyme models that take into account kinetics, allostery and thermodynamics
  Python GPL-3.0 1 9 67 4 Updated Mar 8, 2021

• cameo-notebooks

  Example notebooks for Cameo
  Jupyter Notebook Apache-2.0 1 0 0 1 Updated Mar 8, 2021

• cameo

  cameo - computer aided metabolic engineering & optimization
  Python Apache-2.0 31 81 33 2 Updated Mar 3, 2021

• p-thermo

  Genome-scale metabolic model of P. thermoglucosidasius NCIMB 11955
  HTML Apache-2.0 0 1 4 0 Updated Feb 26, 2021

• swiglpk

  Simple swig bindings for the GNU Linear Programming Kit

  python optimization symbolic scientific-computing modeling-language
  Python GPL-3.0 7 21 10 2 Updated Feb 25, 2021

• trp-scores

  Code used for scoring genes as candidates for increased tryptophan production
  MATLAB MIT 1 2 1 0 Updated Feb 16, 2021

• set_up_grasp_models

  Package to create and check GRASP input models
  Python 0 0 2 0 Updated Feb 16, 2021

• AutoFlow-HTC

  AutoFlow High Throughput Cultivation
  Python MIT 1 1 0 1 Updated Feb 12, 2021

• multitfa

  Multivariate thermodynamics-based metabolic flux analysis in Python.

  python3 thermodynamics multivariate metabolism tfa cobrapy fba
  Python Apache-2.0 0 3 3 0 Updated Feb 3, 2021

• croissance

  Tool for estimating growth rates from microbial growth curves

  bioinformatics biology curve-fitting growth-curves
  Python 8 11 5 0 Updated Jan 21, 2021

• azure-storage-azcopy

  Forked from Azure/azure-storage-azcopy

  The new Azure Storage data transfer utility - AzCopy v10
  Go MIT 103 0 0 0 Updated Oct 27, 2020

• EcoliKineticBenchmark

  This repository contains code to replicate study-benchmark of published E. coli kinetic metabolic models
  Jupyter Notebook 1 3 0 0 Updated Oct 18, 2020

• library_to_samplesheet
  Python 0 0 0 0 Updated Sep 11, 2020

• cell-factory-design-course

  https://biosustain.github.io/cell-factory-design-course/
  Jupyter Notebook 4 5 0 0 Updated Aug 29, 2020

• OpentronsCovid19
  Python 0 1 0 0 Updated Jun 4, 2020

• CfB

  Forked from David-Ca-Re/CfB
  3 0 0 0 Updated Mar 26, 2020

• sanger-sequencing
  Python Apache-2.0 2 0 0 0 Updated Feb 11, 2020

• OpenMS

  Forked from OpenMS/OpenMS

  The codebase of the OpenMS project
  C++ 216 0 28 0 Updated Feb 2, 2020

• memote-meta-study

  Test metabolic models in the wild and rank them according to popularity and how easily they can be improved.
  HTML Apache-2.0 3 2 0 2 Updated Jan 28, 2020

• cfb_rnaseq_prokaryote
  Python MIT 0 0 0 0 Updated Jan 20, 2020

• MastersModel

  Forked from A-Juli/MastersModel

  CSM of CHO cell peturbations
  MATLAB GPL-3.0 2 0 0 0 Updated Jan 16, 2020

• genomediff-python

  GenomeDiff (*.gd) file parser for Python

  parser genomics breseq genomediff
  Python MIT 3 1 1 1 Updated Oct 11, 2019

• chemical-tolerance-supplementary
  Jupyter Notebook 0 1 0 0 Updated Sep 20, 2019

• 2019-08-26-software-carpentry

  https://biosustain.github.io/2019-08-26-software-carpentry/
  Python 0 2 0 0 Updated Aug 12, 2019

• potion

  Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

  flask sqlalchemy mongoengine peewee flask-extensions
  Python 52 484 43 (1 issue needs help) 9 Updated Apr 23, 2019

• memote-meta-models
  2 1 0 0 Updated Apr 11, 2019

• iVnat

  Draft genome-scale metabolic model of Vibrio natriegens
  Jupyter Notebook CC-BY-4.0 0 3 4 0 Updated Apr 2, 2019

• gcn-metabolite-levels

  Predicting changes in metabolite levels using deep graph-convolutional networks.
  HTML 0 0 0 0 Updated Mar 14, 2019

• fermentation-mpc

  Model predictive control (MPC) for fermentations
  Jupyter Notebook 3 3 0 0 Updated Feb 28, 2019

• potion-client

  A Python client for APIs written in Flask-Potion
  Python MIT 10 11 6 1 Updated Jan 22, 2019