DTU Biosustain

Pinned repositories

1. cameo

   cameo - computer aided metabolic engineering & optimization

   Python 60 18

2. optlang

   optlang - sympy based mathematical programming language

   Python 71 16

3. potion

   Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

   Python 428 39

4. gnomic

   A grammar for describing microbial genotypes and phenotypes

   Python 1 1

5. croissance

   Tool for estimating growth rates from microbial growth curves

   Python 4 3

6. ancestry

   AngularJS module with interactive lineage chart components based on D3.js

   JavaScript 11 2

cameo

cameo - computer aided metabolic engineering & optimization

Python 60 18 Apache-2.0 Updated Oct 23, 2018

component-contribution

Forked from eladnoor/component-contribution

Standard reaction Gibbs energy estimation for biochemical reactions

Python 14 MIT Updated Oct 21, 2018

OpenMS

Forked from OpenMS/OpenMS

The codebase of the OpenMS project

C++ 129 Updated Oct 19, 2018

ec_iYO844

Enzyme constrained B. subtilis model (based on iYO844)

Matlab Updated Oct 10, 2018

potion

Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

flask sqlalchemy mongoengine peewee flask-extensions

Python 428 39 1 issue needs help Updated Oct 9, 2018

optlang

optlang - sympy based mathematical programming language

Python 71 16 Apache-2.0 Updated Oct 6, 2018

swiglpk

Simple swig bindings for the GNU Linear Programming Kit

python optimization symbolic scientific-computing modeling-language

Python 12 5 GPL-3.0 Updated Sep 21, 2018

cell-factory-design-course

https://biosustain.github.io/cell-factory-design-course/

Jupyter Notebook 3 Updated Sep 13, 2018

2018-09-10-software-carpentry

Python Updated Sep 11, 2018

sanger-sequencing

Python Apache-2.0 Updated Aug 20, 2018

try-cameo-bio

A docker image based on Jupyter/demo that features COBRA tools

Shell 1 Apache-2.0 Updated Jul 5, 2018

potion-node

TypeScript client for Flask-Potion

TypeScript 8 4 MIT Updated Jul 5, 2018

UserCloningDesignTool

This is everything needed to run the user cloning tool we developed

Perl Updated Apr 12, 2018

crisli

Python Updated Mar 21, 2018

cameo-notebooks

Example notebooks for Cameo

Jupyter Notebook 1 Apache-2.0 Updated Feb 6, 2018

marsi

Metabolite Analogues for Strain Improvement

Python Apache-2.0 Updated Feb 6, 2018

growth-profiler-align

Growth profiler image analysis

Python 3 1 Updated Jan 30, 2018

venom

A transport-agnostic RPC framework for Python

microservices rpc python-3

Python 10 1 MIT 1 issue needs help Updated Jan 30, 2018

pyrcos

Python wrapper for Circos

visualization genome python-wrapper circos circos-graphs

Python 6 1 GPL-3.0 Updated Jan 8, 2018

ancestry

AngularJS module with interactive lineage chart components based on D3.js

visualization nodejs angularjs biology biojs d3js

JavaScript 11 2 Updated Jan 3, 2018

metmap

Methyltransferase binding motif plasmid assembler

Python 1 Updated Nov 23, 2017

modeling-docker-stacks

Python Updated Nov 22, 2017

flask-graphql-rest

Flask extension to expose a GraphQL API as REST API

Python 3 1 MIT Updated Oct 19, 2017

ice

Forked from JBEI/ice

Web based Registry platform for managing synthetic biological parts

Java 18 Updated Oct 9, 2017

2017-09-18-software-carpentry

Python Updated Sep 15, 2017

jupyterhub-deploy-docker

Forked from jupyterhub/jupyterhub-deploy-docker

Reference deployment of JupyterHub with docker

Python 160 Updated Sep 8, 2017

gnomic

A grammar for describing microbial genotypes and phenotypes

python bioinformatics biology microbial-genomics

Python 1 1 Updated Sep 4, 2017

croissance

Tool for estimating growth rates from microbial growth curves

bioinformatics biology curve-fitting growth-curves

Python 4 3 Updated Aug 7, 2017

genomediff-python

GenomeDiff (*.gd) file parser for Python

parser genomics breseq genomediff

Python 1 1 MIT Updated Jul 24, 2017

venom-resource

Python Updated Jun 2, 2017

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