@biosustain

DTU Biosustain

The Novo Nordisk Foundation Center for Biosustainability

Pinned repositories

  1. cameo

    cameo - computer aided metabolic engineering & optimization

    Python 60 18

  2. optlang

    optlang - sympy based mathematical programming language

    Python 71 16

  3. potion

    Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

    Python 428 39

  4. gnomic

    A grammar for describing microbial genotypes and phenotypes

    Python 1 1

  5. croissance

    Tool for estimating growth rates from microbial growth curves

    Python 4 3

  6. ancestry

    AngularJS module with interactive lineage chart components based on D3.js

    JavaScript 11 2

  • cameo - computer aided metabolic engineering & optimization

    Python 60 18 Apache-2.0 Updated Oct 23, 2018
  • Standard reaction Gibbs energy estimation for biochemical reactions

    Python 14 MIT Updated Oct 21, 2018
  • OpenMS

    Forked from OpenMS/OpenMS

    The codebase of the OpenMS project

    C++ 129 Updated Oct 19, 2018
  • Enzyme constrained B. subtilis model (based on iYO844)

    Matlab Updated Oct 10, 2018
  • Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

    Python 428 39 1 issue needs help Updated Oct 9, 2018
  • optlang - sympy based mathematical programming language

    Python 71 16 Apache-2.0 Updated Oct 6, 2018
  • Simple swig bindings for the GNU Linear Programming Kit

    Python 12 5 GPL-3.0 Updated Sep 21, 2018
  • Jupyter Notebook 3 Updated Sep 13, 2018
  • Python Updated Sep 11, 2018
  • Python Apache-2.0 Updated Aug 20, 2018
  • A docker image based on Jupyter/demo that features COBRA tools

    Shell 1 Apache-2.0 Updated Jul 5, 2018
  • TypeScript client for Flask-Potion

    TypeScript 8 4 MIT Updated Jul 5, 2018
  • This is everything needed to run the user cloning tool we developed

    Perl Updated Apr 12, 2018
  • Python Updated Mar 21, 2018
  • Example notebooks for Cameo

    Jupyter Notebook 1 Apache-2.0 Updated Feb 6, 2018
  • Metabolite Analogues for Strain Improvement

    Python Apache-2.0 Updated Feb 6, 2018
  • Growth profiler image analysis

    Python 3 1 Updated Jan 30, 2018
  • A transport-agnostic RPC framework for Python

    Python 10 1 MIT 1 issue needs help Updated Jan 30, 2018
  • Python wrapper for Circos

    Python 6 1 GPL-3.0 Updated Jan 8, 2018
  • AngularJS module with interactive lineage chart components based on D3.js

    JavaScript 11 2 Updated Jan 3, 2018
  • Methyltransferase binding motif plasmid assembler

    Python 1 Updated Nov 23, 2017
  • Python Updated Nov 22, 2017
  • Flask extension to expose a GraphQL API as REST API

    Python 3 1 MIT Updated Oct 19, 2017
  • ice

    Forked from JBEI/ice

    Web based Registry platform for managing synthetic biological parts

    Java 18 Updated Oct 9, 2017
  • Python Updated Sep 15, 2017
  • Reference deployment of JupyterHub with docker

    Python 160 Updated Sep 8, 2017
  • A grammar for describing microbial genotypes and phenotypes

    Python 1 1 Updated Sep 4, 2017
  • Tool for estimating growth rates from microbial growth curves

    Python 4 3 Updated Aug 7, 2017
  • GenomeDiff (*.gd) file parser for Python

    Python 1 1 MIT Updated Jul 24, 2017
  • Python Updated Jun 2, 2017
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