diff --git a/README.md b/README.md index 8c6e046e5..07922de9d 100644 --- a/README.md +++ b/README.md @@ -5,16 +5,7 @@ [![Gitter chat](https://badges.gitter.im/biosustain/cameo.png)](https://gitter.im/biosustain/cameo) ### Vision -Provide a high-level python library to aid the strain design efforts of the CFB iLoop design group. The library provides a modular architecture that enables the efficient construction of custom analysis workflows. - -### Design - -**No more copying** making copies of models is expensive, stick to the [_command pattern_](http://en.wikipedia.org/wiki/Command_pattern) using TimeMachine (util.py) -**Database**: no more flatfiles ... -**Caching**: optimization results are cached -**Parallelization**: parallelize algorithms -**Long-running jobs**: hide paralellization -**Wrap third party tools**: for example [fast-tFVA](http://bioinformatics.oxfordjournals.org/content/29/7/903) +Provide a high-level python library to aid _in silico_ strain design process in metabolic engineering projects. The library provides a modular architecture that enables the efficient construction of custom analysis workflows. ### Dependencies This library dependes on diff --git a/setup.py b/setup.py index 349c08fd9..bcd91502f 100644 --- a/setup.py +++ b/setup.py @@ -26,6 +26,13 @@ 'git+https://github.com/biosustain/ipython_notebook_utils.git@master#egg=ipython_notebook_utils' ] +# from https://coderwall.com/p/qawuyq +try: + import pypandoc + + description = pypandoc.convert('README.md', 'rst') +except (IOError, ImportError): + description = '' setup( name='cameo', @@ -39,7 +46,7 @@ license='Apache License Version 2.0', keywords='biology metabolism bioinformatics', url='TBD', - long_description=open('README.md').read(), + long_description=description, classifiers=[ 'Development Status :: 3 - Alpha', 'Topic :: Utilities',