/biothings.api

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Hub component

The purpose of the BioThings hub component is to allow you to easily automate the parsing and uploading of your data to an Elasticsearch backend.

.. py:module:: biothings

dumper

BaseDumper

.. autoclass:: biothings.hub.dataload.dumper.BaseDumper
    :members:

FTPDumper

.. autoclass:: biothings.hub.dataload.dumper.FTPDumper
    :members:

HTTPDumper

.. autoclass:: biothings.hub.dataload.dumper.HTTPDumper
    :members:
GoogleDriveDumper
.. autoclass:: biothings.hub.dataload.dumper.GoogleDriveDumper
    :members:

WgetDumper

.. autoclass:: biothings.hub.dataload.dumper.WgetDumper
    :members:

DummyDumper

.. autoclass:: biothings.hub.dataload.dumper.DummyDumper
    :members:

ManualDumper

.. autoclass:: biothings.hub.dataload.dumper.ManualDumper
    :members:

uploader

BaseSourceUploader

.. autoclass:: biothings.hub.dataload.uploader.BaseSourceUploader
    :members:

NoBatchIgnoreDuplicatedSourceUploader

.. autoclass:: biothings.hub.dataload.uploader.NoBatchIgnoreDuplicatedSourceUploader
    :members:

IgnoreDuplicatedSourceUploader

.. autoclass:: biothings.hub.dataload.uploader.IgnoreDuplicatedSourceUploader
    :members:

MergerSourceUploader

.. autoclass:: biothings.hub.dataload.uploader.MergerSourceUploader
    :members:

DummySourceUploader

.. autoclass:: biothings.hub.dataload.uploader.DummySourceUploader
    :members:

ParallelizedSourceUploader

.. autoclass:: biothings.hub.dataload.uploader.ParallelizedSourceUploader
    :members:

NoDataSourceUploader

.. autoclass:: biothings.hub.dataload.uploader.NoDataSourceUploader
    :members:

builder

DataBuilder

.. autoclass:: biothings.hub.databuild.builder.DataBuilder
    :members:

indexer

Indexer

.. autoclass:: biothings.hub.dataindex.indexer.Indexer
    :members:

differ

BaseDiffer

.. autoclass:: biothings.hub.databuild.differ.BaseDiffer
    :members:

JsonDiffer

.. autoclass:: biothings.hub.databuild.differ.JsonDiffer
    :members:
SelfContainedJsonDiffer
.. autoclass:: biothings.hub.databuild.differ.SelfContainedJsonDiffer
    :members:

DiffReportRendererBase

.. autoclass:: biothings.hub.databuild.differ.DiffReportRendererBase
    :members:

DiffReportTxt

.. autoclass:: biothings.hub.databuild.differ.DiffReportTxt
    :members:

syncer

BaseSyncer

.. autoclass:: biothings.hub.databuild.syncer.BaseSyncer
    :members:

MongoJsonDiffSyncer

.. autoclass:: biothings.hub.databuild.syncer.MongoJsonDiffSyncer
    :members:

MongoJsonDiffSelfContainedSyncer

.. autoclass:: biothings.hub.databuild.syncer.MongoJsonDiffSelfContainedSyncer
    :members:

ESJsonDiffSyncer

.. autoclass:: biothings.hub.databuild.syncer.ESJsonDiffSyncer
    :members:

ESJsonDiffSelfContainedSyncer

.. autoclass:: biothings.hub.databuild.syncer.ESJsonDiffSelfContainedSyncer
    :members: