From afb35ee7a45be5338a7ad4bdbcab1b0479bcc7b4 Mon Sep 17 00:00:00 2001 From: Marco Cano Date: Wed, 16 Jun 2021 17:17:54 -0700 Subject: [PATCH 1/2] build: upgrade handler and dep call executor --- package-lock.json | 158 ++++++++++++++++------------------------------ package.json | 2 +- 2 files changed, 54 insertions(+), 106 deletions(-) diff --git a/package-lock.json b/package-lock.json index 42a00141..f1aad41f 100644 --- a/package-lock.json +++ b/package-lock.json @@ -5,11 +5,10 @@ "requires": true, "packages": { "": { - "name": "@biothings-explorer/single-hop-app", - "version": "2.8.0", + "version": "2.8.1", "license": "ISC", "dependencies": { - "@biothings-explorer/query_graph_handler": "^1.17.1", + "@biothings-explorer/query_graph_handler": "^1.17.5", "@biothings-explorer/smartapi-kg": "^3.8.1", "axios": "^0.21.1", "body-parser": "^1.19.0", @@ -456,10 +455,19 @@ "version": "0.19.2", "resolved": "https://registry.npmjs.org/axios/-/axios-0.19.2.tgz", "integrity": "sha512-fjgm5MvRHLhx+osE2xoekY70AhARk3a6hkN+3Io1jc00jtquGvxYlKlsFUhmUET0V5te6CcZI7lcv2Ym61mjHA==", + "deprecated": "Critical security vulnerability fixed in v0.21.1. For more information, see https://github.com/axios/axios/pull/3410", "dependencies": { "follow-redirects": "1.5.10" } }, + "node_modules/@biothings-explorer/api-response-transform/node_modules/debug": { + "version": "3.1.0", + "resolved": "https://registry.npmjs.org/debug/-/debug-3.1.0.tgz", + "integrity": "sha512-OX8XqP7/1a9cqkxYw2yXss15f26NKWBpDXQd0/uK/KPqdQhxbPa994hnzjcE2VqQpDslf55723cKPUOGSmMY3g==", + "dependencies": { + "ms": "2.0.0" + } + }, "node_modules/@biothings-explorer/api-response-transform/node_modules/follow-redirects": { "version": "1.5.10", "resolved": "https://registry.npmjs.org/follow-redirects/-/follow-redirects-1.5.10.tgz", @@ -471,23 +479,15 @@ "node": ">=4.0" } }, - "node_modules/@biothings-explorer/api-response-transform/node_modules/follow-redirects/node_modules/debug": { - "version": "3.1.0", - "resolved": "https://registry.npmjs.org/debug/-/debug-3.1.0.tgz", - "integrity": "sha512-OX8XqP7/1a9cqkxYw2yXss15f26NKWBpDXQd0/uK/KPqdQhxbPa994hnzjcE2VqQpDslf55723cKPUOGSmMY3g==", - "dependencies": { - "ms": "2.0.0" - } - }, "node_modules/@biothings-explorer/api-response-transform/node_modules/ms": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/ms/-/ms-2.0.0.tgz", "integrity": "sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g=" }, "node_modules/@biothings-explorer/call-apis": { - "version": "1.23.1", - "resolved": "https://registry.npmjs.org/@biothings-explorer/call-apis/-/call-apis-1.23.1.tgz", - "integrity": "sha512-0dIc/duAHG+2STf+XIv3BLirswua6xAUfJzu5zEuO5yj3IjLBQoLbXEdl9hYhthpgVH0fP2k+YvUQFHtC8P7kQ==", + "version": "1.23.2", + "resolved": "https://registry.npmjs.org/@biothings-explorer/call-apis/-/call-apis-1.23.2.tgz", + "integrity": "sha512-mYT60yqdKJjBT0Lh5g76/XpcibQ0o5I1H5cORJ6EzokuoMYLY+LQXJnSm0mnJjtX5H1AisB4tSvwdnd6VwePQw==", "dependencies": { "@biothings-explorer/api-response-transform": "^1.11.0", "axios": "^0.21.1", @@ -507,18 +507,18 @@ } }, "node_modules/@biothings-explorer/query_graph_handler": { - "version": "1.17.1", - "resolved": "https://registry.npmjs.org/@biothings-explorer/query_graph_handler/-/query_graph_handler-1.17.1.tgz", - 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}, "node_modules/dot-prop": { "version": "5.3.0", "resolved": "https://registry.npmjs.org/dot-prop/-/dot-prop-5.3.0.tgz", @@ -9167,9 +9162,9 @@ } }, "node_modules/jsonata": { - "version": "1.8.3", - "resolved": "https://registry.npmjs.org/jsonata/-/jsonata-1.8.3.tgz", - "integrity": "sha512-r6ztI6ohbpRo77AxBm6vMs3aHZi2L2PaakW7TCPwSkeGcuAZ/SxXGLWH2Npwqq5+YBM/fg/g0EXg/pI9HvXQ8Q==", + "version": "1.8.4", + "resolved": "https://registry.npmjs.org/jsonata/-/jsonata-1.8.4.tgz", + "integrity": "sha512-OqzmM5IICtm/687zckG5BROZzInGCEuKojpYs48H8RnkII8Np+o912ryvhnYwsRrSI24TQRG/qqrSwBuaneDbg==", "engines": { "node": ">= 8" } @@ -9486,11 +9481,6 @@ "tslib": "^2.0.3" } }, - "node_modules/lower-case/node_modules/tslib": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.0.3.tgz", - "integrity": "sha512-uZtkfKblCEQtZKBF6EBXVZeQNl82yqtDQdv+eck8u7tdPxjLu2/lp5/uPW+um2tpuxINHWy3GhiccY7QgEaVHQ==" - }, "node_modules/lowercase-keys": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/lowercase-keys/-/lowercase-keys-1.0.1.tgz", @@ -9924,11 +9914,6 @@ "tslib": "^2.0.3" } }, - 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}, "node_modules/snapdragon": { "version": "0.8.2", "resolved": "https://registry.npmjs.org/snapdragon/-/snapdragon-0.8.2.tgz", @@ -17390,6 +17365,11 @@ "integrity": "sha1-NEiaLKwMCcHMEO2RugEVlNQzO+I=", "dev": true }, + "node_modules/tslib": { + "version": "2.3.0", + "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.3.0.tgz", + "integrity": "sha512-N82ooyxVNm6h1riLCoyS9e3fuJ3AMG2zIZs2Gd1ATcSFjSA23Q0fzjjZeh0jbJvWVDZ0cJT8yaNNaaXHzueNjg==" + }, "node_modules/tunnel-agent": { "version": "0.6.0", "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", @@ -18599,22 +18579,20 @@ "follow-redirects": "1.5.10" } }, + "debug": { + "version": "3.1.0", + "resolved": "https://registry.npmjs.org/debug/-/debug-3.1.0.tgz", + "integrity": "sha512-OX8XqP7/1a9cqkxYw2yXss15f26NKWBpDXQd0/uK/KPqdQhxbPa994hnzjcE2VqQpDslf55723cKPUOGSmMY3g==", + "requires": { + "ms": "2.0.0" + } + }, "follow-redirects": { "version": "1.5.10", "resolved": "https://registry.npmjs.org/follow-redirects/-/follow-redirects-1.5.10.tgz", "integrity": "sha512-0V5l4Cizzvqt5D44aTXbFZz+FtyXV1vrDN6qrelxtfYQKW0KO0W2T/hkE8xvGa/540LkZlkaUjO4ailYTFtHVQ==", "requires": { "debug": "=3.1.0" - }, - "dependencies": { - "debug": { - "version": "3.1.0", - "resolved": "https://registry.npmjs.org/debug/-/debug-3.1.0.tgz", - "integrity": "sha512-OX8XqP7/1a9cqkxYw2yXss15f26NKWBpDXQd0/uK/KPqdQhxbPa994hnzjcE2VqQpDslf55723cKPUOGSmMY3g==", - "requires": { - "ms": "2.0.0" - } - } } }, "ms": { @@ -18625,9 +18603,9 @@ } }, "@biothings-explorer/call-apis": { - "version": "1.23.1", - "resolved": "https://registry.npmjs.org/@biothings-explorer/call-apis/-/call-apis-1.23.1.tgz", - "integrity": "sha512-0dIc/duAHG+2STf+XIv3BLirswua6xAUfJzu5zEuO5yj3IjLBQoLbXEdl9hYhthpgVH0fP2k+YvUQFHtC8P7kQ==", + "version": "1.23.2", + "resolved": "https://registry.npmjs.org/@biothings-explorer/call-apis/-/call-apis-1.23.2.tgz", + "integrity": "sha512-mYT60yqdKJjBT0Lh5g76/XpcibQ0o5I1H5cORJ6EzokuoMYLY+LQXJnSm0mnJjtX5H1AisB4tSvwdnd6VwePQw==", "requires": { "@biothings-explorer/api-response-transform": "^1.11.0", "axios": "^0.21.1", @@ -18647,18 +18625,18 @@ } }, "@biothings-explorer/query_graph_handler": { - "version": "1.17.1", - "resolved": "https://registry.npmjs.org/@biothings-explorer/query_graph_handler/-/query_graph_handler-1.17.1.tgz", - "integrity": "sha512-XKkEU850AbrOlxjd2bQMcDCxP6zXx1Ah9BMn/3XXG1XUrjjdhuhSFV2CpQKj1TJ7RNYNgKi6BNCs5Ua01glE1w==", + "version": "1.17.5", + "resolved": "https://registry.npmjs.org/@biothings-explorer/query_graph_handler/-/query_graph_handler-1.17.5.tgz", + "integrity": "sha512-si0IzHUD7YlC4QurHV7N8RXDRjyc5WE9QVlhZk8/baLukxrc6zpAkC5yqNcjNGHR2OWvMZ1r8HHMtiANfvC1Ag==", "requires": { - "@biothings-explorer/call-apis": "^1.23.1", + "@biothings-explorer/call-apis": "^1.23.2", "@biothings-explorer/smartapi-kg": "^3.8.1", - "biolink-model": "^0.3.0", + "biolink-model": "^0.3.1", "biomedical_id_resolver": "^3.9.0", "debug": "^4.3.1", "lodash": "^4.17.21", "ms": "^2.1.3", - "redis": "^3.0.2" + "redis": "^3.1.1" }, "dependencies": { "ms": { @@ -22361,13 +22339,6 @@ "requires": { "no-case": "^3.0.4", "tslib": "^2.0.3" - }, - "dependencies": { - "tslib": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.0.3.tgz", - "integrity": "sha512-uZtkfKblCEQtZKBF6EBXVZeQNl82yqtDQdv+eck8u7tdPxjLu2/lp5/uPW+um2tpuxINHWy3GhiccY7QgEaVHQ==" - } } }, "dot-prop": { @@ -25658,9 +25629,9 @@ } }, "jsonata": { - "version": "1.8.3", - "resolved": "https://registry.npmjs.org/jsonata/-/jsonata-1.8.3.tgz", - "integrity": "sha512-r6ztI6ohbpRo77AxBm6vMs3aHZi2L2PaakW7TCPwSkeGcuAZ/SxXGLWH2Npwqq5+YBM/fg/g0EXg/pI9HvXQ8Q==" + "version": "1.8.4", + "resolved": "https://registry.npmjs.org/jsonata/-/jsonata-1.8.4.tgz", + "integrity": "sha512-OqzmM5IICtm/687zckG5BROZzInGCEuKojpYs48H8RnkII8Np+o912ryvhnYwsRrSI24TQRG/qqrSwBuaneDbg==" }, "jsonfile": { "version": "6.1.0", @@ -25918,13 +25889,6 @@ "integrity": "sha512-7fm3l3NAF9WfN6W3JOmf5drwpVqX78JtoGJ3A6W0a6ZnldM41w2fV5D490psKFTpMds8TJse/eHLFFsNHHjHgg==", "requires": { "tslib": "^2.0.3" - }, - "dependencies": { - "tslib": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.0.3.tgz", - "integrity": "sha512-uZtkfKblCEQtZKBF6EBXVZeQNl82yqtDQdv+eck8u7tdPxjLu2/lp5/uPW+um2tpuxINHWy3GhiccY7QgEaVHQ==" - } } }, "lowercase-keys": { @@ -26268,13 +26232,6 @@ "requires": { "lower-case": "^2.0.2", "tslib": "^2.0.3" - }, - "dependencies": { - "tslib": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.0.3.tgz", - "integrity": "sha512-uZtkfKblCEQtZKBF6EBXVZeQNl82yqtDQdv+eck8u7tdPxjLu2/lp5/uPW+um2tpuxINHWy3GhiccY7QgEaVHQ==" - } } }, "node-cron": { @@ -29875,13 +29832,6 @@ "requires": { "no-case": "^3.0.4", "tslib": "^2.0.3" - }, - "dependencies": { - "tslib": { - "version": "2.2.0", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.2.0.tgz", - "integrity": "sha512-gS9GVHRU+RGn5KQM2rllAlR3dU6m7AcpJKdtH8gFvQiC4Otgk98XnmMU+nZenHt/+VhnBPWwgrJsyrdcw6i23w==" - } } }, "pascalcase": { @@ -30851,13 +30801,6 @@ "requires": { "dot-case": "^3.0.4", "tslib": "^2.0.3" - }, - "dependencies": { - "tslib": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.0.3.tgz", - "integrity": "sha512-uZtkfKblCEQtZKBF6EBXVZeQNl82yqtDQdv+eck8u7tdPxjLu2/lp5/uPW+um2tpuxINHWy3GhiccY7QgEaVHQ==" - } } }, "snapdragon": { @@ -31850,6 +31793,11 @@ "integrity": "sha1-NEiaLKwMCcHMEO2RugEVlNQzO+I=", "dev": true }, + "tslib": { + "version": "2.3.0", + "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.3.0.tgz", + "integrity": "sha512-N82ooyxVNm6h1riLCoyS9e3fuJ3AMG2zIZs2Gd1ATcSFjSA23Q0fzjjZeh0jbJvWVDZ0cJT8yaNNaaXHzueNjg==" + }, "tunnel-agent": { "version": "0.6.0", "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", diff --git a/package.json b/package.json index 5da6a07c..b0c160e0 100644 --- a/package.json +++ b/package.json @@ -43,7 +43,7 @@ "supertest": "^6.1.3" }, "dependencies": { - "@biothings-explorer/query_graph_handler": "^1.17.3", + "@biothings-explorer/query_graph_handler": "^1.17.5", "@biothings-explorer/smartapi-kg": "^3.8.1", "axios": "^0.21.1", "body-parser": "^1.19.0", From 1c0e1e8a2105f76f451f4349d5e501211500b168 Mon Sep 17 00:00:00 2001 From: Marco Cano Date: Thu, 24 Jun 2021 14:51:22 -0700 Subject: [PATCH 2/2] build: upgrade handler dependency --- package-lock.json | 120 +++++++++++----------------------------------- package.json | 2 +- 2 files changed, 28 insertions(+), 94 deletions(-) diff --git a/package-lock.json b/package-lock.json index f1aad41f..bf6656d6 100644 --- a/package-lock.json +++ b/package-lock.json @@ -8,7 +8,7 @@ "version": "2.8.1", "license": "ISC", "dependencies": { - "@biothings-explorer/query_graph_handler": "^1.17.5", + "@biothings-explorer/query_graph_handler": "^1.17.6", "@biothings-explorer/smartapi-kg": "^3.8.1", "axios": "^0.21.1", "body-parser": "^1.19.0", @@ -485,13 +485,13 @@ "integrity": "sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g=" }, "node_modules/@biothings-explorer/call-apis": { - "version": "1.23.2", - "resolved": "https://registry.npmjs.org/@biothings-explorer/call-apis/-/call-apis-1.23.2.tgz", - "integrity": "sha512-mYT60yqdKJjBT0Lh5g76/XpcibQ0o5I1H5cORJ6EzokuoMYLY+LQXJnSm0mnJjtX5H1AisB4tSvwdnd6VwePQw==", + "version": "1.23.3", + "resolved": "https://registry.npmjs.org/@biothings-explorer/call-apis/-/call-apis-1.23.3.tgz", + "integrity": "sha512-dooMrfLQVKgaSwnbhtP+JTmbhostGPrHmdmq/WEQxl+Dy1jbDOYZaE48uheBoIQ15Izf1IB3dYCBhVf1G6IH8A==", "dependencies": { "@biothings-explorer/api-response-transform": "^1.11.0", "axios": "^0.21.1", - "biomedical_id_resolver": "^3.9.0", + "biomedical_id_resolver": "^3.9.1", "debug": "^4.3.1", "husky": "^4.3.8" } @@ -507,14 +507,14 @@ } }, "node_modules/@biothings-explorer/query_graph_handler": { - 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