Last login: Wed Nov 29 15:03:10 on ttys002
➜  biothings_explorer git:(dev) ✗ USE_THREADING=false pnpm start                                            [29/11/23| 3:58PM] 

> @biothings-explorer/bte-trapi@3.0.0 start /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer
> ./scripts/start_server.sh


> @biothings-explorer/bte-trapi@3.0.0 debug /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer
> DEBUG=biomedical-id-resolver,bte* pnpm run watch


> @biothings-explorer/bte-trapi@3.0.0 watch /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer
> nodemon -e js,mjs,json,ts --watch './packages/**/src/*' './packages/**/data/*' --exec 'pnpm run build && node .'

[nodemon] 2.0.22
[nodemon] to restart at any time, enter `rs`
[nodemon] watching path(s): packages/**/src/**/*
[nodemon] watching extensions: js,mjs,json,ts
[nodemon] starting `pnpm run build && node . ./packages/**/data/*`

> @biothings-explorer/bte-trapi@3.0.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer
> turbo run build

• Packages in scope: @biothings-explorer/api-response-transform, @biothings-explorer/bte-server, @biothings-explorer/call-apis, @biothings-explorer/node-expansion, @biothings-explorer/query_graph_handler, @biothings-explorer/smartapi-kg, @biothings-explorer/utils, @marcodarko/btewebapp, biolink-model, biomedical_id_resolver
• Running build in 10 packages
• Remote caching disabled
@biothings-explorer/node-expansion:build: cache hit (outputs already on disk), replaying logs 302d8c0f85ae0f0e
@marcodarko/btewebapp:build: cache hit (outputs already on disk), replaying logs e5ce85d43b9b1f49
@biothings-explorer/utils:build: cache hit (outputs already on disk), replaying logs 01cfe35d60b54da6
@biothings-explorer/smartapi-kg:build: cache hit (outputs already on disk), replaying logs 2b621eefa322dd34
biolink-model:build: cache hit (outputs already on disk), replaying logs bea0a31c9bf36fc0
@marcodarko/btewebapp:build: 
@marcodarko/btewebapp:build: > @marcodarko/btewebapp@1.0.8 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/web-app
@marcodarko/btewebapp:build: > vite build
@marcodarko/btewebapp:build: 
@marcodarko/btewebapp:build: vite v3.2.7 building for production...
@marcodarko/btewebapp:build: transforming...
@biothings-explorer/node-expansion:build: 
@biothings-explorer/utils:build: 
@biothings-explorer/node-expansion:build: > @biothings-explorer/node-expansion@1.0.1 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/node-expansion
@biothings-explorer/node-expansion:build: > tsc -b
@biothings-explorer/node-expansion:build: 
@biothings-explorer/utils:build: > @biothings-explorer/utils@1.0.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/utils
biolink-model:build: 
@biothings-explorer/utils:build: > tsc -b
@biothings-explorer/utils:build: 
biolink-model:build: > biolink-model@0.4.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/biolink-model
biolink-model:build: > tsc -b
biolink-model:build: 
@biothings-explorer/smartapi-kg:build: 
@marcodarko/btewebapp:build: ✓ 344 modules transformed.
@biothings-explorer/smartapi-kg:build: > @biothings-explorer/smartapi-kg@4.0.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/smartapi-kg
@biothings-explorer/smartapi-kg:build: > tsc --project ./
@biothings-explorer/smartapi-kg:build: 
@marcodarko/btewebapp:build: rendering chunks...
@marcodarko/btewebapp:build: dist/assets/ncats-logo.f82e9583.png     15.78 KiB
@marcodarko/btewebapp:build: dist/assets/nih-logo.0ec775d8.png       59.07 KiB
@marcodarko/btewebapp:build: dist/assets/scripps-logo.d1e0e4e4.png   81.09 KiB
@marcodarko/btewebapp:build: dist/assets/network-01.53f6646d.svg     10.59 KiB
@marcodarko/btewebapp:build: dist/assets/network-2-01.6f8a0493.svg   2.54 KiB
@marcodarko/btewebapp:build: dist/index.html                         0.47 KiB
@marcodarko/btewebapp:build: dist/assets/AboutView.81de67cf.js       5.59 KiB / gzip: 2.07 KiB
@marcodarko/btewebapp:build: dist/assets/Try.2ffac24d.css            0.55 KiB / gzip: 0.18 KiB
@marcodarko/btewebapp:build: dist/assets/index.0ade1f1b.css          20.10 KiB / gzip: 4.89 KiB
@marcodarko/btewebapp:build: dist/assets/index.ca2a4357.js           181.54 KiB / gzip: 63.44 KiB
@marcodarko/btewebapp:build: dist/assets/cytoscape.cjs.75aa3387.js   358.97 KiB / gzip: 115.26 KiB
@marcodarko/btewebapp:build: dist/assets/Try.7075c0ec.js             472.38 KiB / gzip: 155.63 KiB
biomedical_id_resolver:build: cache hit (outputs already on disk), replaying logs a0cb2321277fa823
biomedical_id_resolver:build: 
biomedical_id_resolver:build: > biomedical_id_resolver@3.11.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/biomedical_id_resolver
biomedical_id_resolver:build: > tsc -b
biomedical_id_resolver:build: 
@biothings-explorer/api-response-transform:build: cache hit, replaying logs a11c56ebdea0a949
@biothings-explorer/api-response-transform:build: 
@biothings-explorer/api-response-transform:build: > @biothings-explorer/api-response-transform@1.12.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/api-response-transform
@biothings-explorer/api-response-transform:build: > tsc -b
@biothings-explorer/api-response-transform:build: 
@biothings-explorer/call-apis:build: cache hit (outputs already on disk), replaying logs aa5d1eed6c6ccd7d
@biothings-explorer/call-apis:build: 
@biothings-explorer/call-apis:build: > @biothings-explorer/call-apis@1.24.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/call-apis
@biothings-explorer/call-apis:build: > tsc -b
@biothings-explorer/call-apis:build: 
@biothings-explorer/query_graph_handler:build: cache hit (outputs already on disk), replaying logs dcc942f490430926
@biothings-explorer/query_graph_handler:build: 
@biothings-explorer/query_graph_handler:build: > @biothings-explorer/query_graph_handler@1.18.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/query_graph_handler
@biothings-explorer/query_graph_handler:build: > tsc -b
@biothings-explorer/query_graph_handler:build: 
@biothings-explorer/bte-server:build: cache hit (outputs already on disk), replaying logs a69b49b91002ad5c
@biothings-explorer/bte-server:build: 
@biothings-explorer/bte-server:build: > @biothings-explorer/bte-server@3.0.0 build /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/bte-server
@biothings-explorer/bte-server:build: > tsc -b
@biothings-explorer/bte-server:build: 

 Tasks:    10 successful, 10 total
Cached:    10 cached, 10 total
  Time:    376ms >>> FULL TURBO

  bte:biothings-explorer-trapi:bullboard Initializing Bull Dashboard +0ms
  bte:biothings-explorer-trapi:bullboard Redis is not enabled, disabling Bull Dashboard +1ms
  bte:biothings-explorer-trapi:cron SmartAPI sync disabled, server process 79102 disabling smartapi updates. +0ms
  bte:biothings-explorer-trapi:server-start Instance Env: local +0ms
⭐⭐⭐ BioThings Explorer is ready! ⭐ Try it now @ http://localhost:3000 ✨
  bte:biothings-explorer-trapi:main Expanded ids for node n0: (1 ids -> 1 ids) +0ms
  bte:biothings-explorer-trapi:main Automat-biolink(Trapi v1.4.0) not found in smartapi registry +107ms
  bte:biothings-explorer-trapi:main Start to load metakg. +353ms
  bte:biothings-explorer-trapi:main Query options are: {"apiList":{"include":[{"id":"d22b657426375a5295e7da8a303b9893","name":"BioLink API"},{"id":"0212611d1c670f9107baf00b77f0889a","name":"CTD API","primarySource":true},{"id":"43af91b3d7cae43591083bff9d75c6dd","name":"EBI Proteins API"},{"id":"dca415f2d792976af9d642b7e73f7a41","name":"LitVar API"},{"id":"1f277e1563fcfd124bfae2cc3c4bcdec","name":"QuickGO API"},{"id":"1c056ffc7ed0dd1229e71c4752239465","name":"Ontology Lookup Service API"},{"id":"38e9e5169a72aee3659c9ddba956790d","name":"BioThings BindingDB API"},{"id":"55a223c6c6e0291dbd05f2faf27d16f4","name":"BioThings BioPlanet Pathway-Disease API"},{"id":"b99c6dd64abcefe87dcd0a51c249ee6d","name":"BioThings BioPlanet Pathway-Gene API"},{"id":"00fb85fc776279163199e6c50f6ddfc6","name":"BioThings DDInter API"},{"id":"e3edd325c76f2992a111b43a907a4870","name":"BioThings DGIdb API"},{"id":"a7f784626a426d054885a5f33f17d3f8","name":"BioThings DISEASES API"},{"id":"1f47552dabd67351d4c625adb0a10d00","name":"BioThings EBIgene2phenotype API"},{"id":"cc857d5b7c8b7609b5bbb38ff990bfff","name":"BioThings GO Biological Process API"},{"id":"f339b28426e7bf72028f60feefcd7465","name":"BioThings GO Cellular Component API"},{"id":"34bad236d77bea0a0ee6c6cba5be54a6","name":"BioThings GO Molecular Function API"},{"id":"316eab811fd9ef1097df98bcaa9f7361","name":"BioThings GTRx API"},{"id":"a5b0ec6bfde5008984d4b6cde402d61f","name":"BioThings HPO API"},{"id":"32f36164fabed5d3abe6c2fd899c9418","name":"BioThings IDISK API"},{"id":"77ed27f111262d0289ed4f4071faa619","name":"BioThings MGIgene2phenotype API"},{"id":"edeb26858bd27d0322af93e7a9e08761","name":"BioThings PFOCR API"},{"id":"b772ebfbfa536bba37764d7fddb11d6f","name":"BioThings RARe-SOURCE API"},{"id":"03283cc2b21c077be6794e1704b1d230","name":"BioThings Rhea API"},{"id":"1d288b3a3caf75d541ffaae3aab386c8","name":"BioThings SEMMEDDB API"},{"id":"b48c34df08d16311e3bca06b135b828d","name":"BioThings SuppKG API"},{"id":"e481efd21f8e8c1deac05662439c2294","name":"Biothings Therapeutic Target Database API"},{"id":"ec6d76016ef40f284359d17fbf78df20","name":"BioThings UBERON API"},{"id":"8f08d1446e0bb9c2b323713ce83e2bd3","name":"MyChem.info API"},{"id":"671b45c0301c8624abbd26ae78449ca2","name":"MyDisease.info API"},{"id":"59dce17363dce279d389100834e43648","name":"MyGene.info API"},{"id":"09c8782d9f4027712e65b95424adba79","name":"MyVariant.info API"},{"id":"adf20dd6ff23dfe18e8e012bde686e31","name":"Multiomics BigGIM-DrugResponse KP API"},{"id":"08a5ddcde71b4bf838327ef469076acd","name":"Multiomics ClinicalTrials KP"},{"id":"d86a24f6027ffe778f84ba10a7a1861a","name":"Multiomics EHR Risk KP API"},{"id":"02af7d098ab304e80d6f4806c3527027","name":"Multiomics Wellness KP API"},{"id":"978fe380a147a8641caf72320862697b","name":"Text Mining Targeted Association API"},{"id":"ef0656900ff73f861611bcad87a94bce","name":"Automat-biolink(Trapi v1.4.0)"},{"id":"97da45e75266b021fae885735befad07","name":"Automat-ctd(Trapi v1.4.0)"},{"id":"a80b9c70e756453d1ce8971b59fe1778","name":"Automat-drug-central(Trapi v1.4.0)"},{"id":"2575e053d0a631433b447995e1bc9602","name":"Automat-gtex(Trapi v1.4.0)"},{"id":"387f7a2c21656ddfcce5ccf9ea459049","name":"Automat-gtopdb(Trapi v1.4.0)"},{"id":"cd9fc0ca8cc6d9f56bd56a34766de791","name":"Automat-gwas-catalog(Trapi v1.4.0)"},{"id":"8a1e2c2eade9fe3a932ba1dbb7f85688","name":"Automat-hetio(Trapi v1.4.0)"},{"id":"067d3a847117c6f42896cc8cd140a704","name":"Automat-hgnc(Trapi v1.4.0)"},{"id":"0658e8749b9601a5faba5157ba12eb06","name":"Automat-hmdb(Trapi v1.4.0)"},{"id":"43cf256c660cc5bdeac23fdd3063d474","name":"Automat-human-goa(Trapi v1.4.0)"},{"id":"76a164ff43e7ab39a5b98a782f6361bf","name":"Automat-icees-kg(Trapi v1.4.0)"},{"id":"0b0a4d48ccd9ad2fd34ee53c34f87e94","name":"Automat-intact(Trapi v1.4.0)"},{"id":"26ca4939d437c411bcb65b85a9dc2b99","name":"Automat-panther(Trapi v1.4.0)"},{"id":"1c71f68839a44b1b857e79ae7f7e3381","name":"Automat-pharos(Trapi v1.4.0)"},{"id":"465ff6de7ddf35ca8b2df6c0b01e6554","name":"Automat-viral-proteome(Trapi v1.4.0)"},{"id":"af364143267ad5235bf78c1511223875","name":"COHD TRAPI"},{"id":"23f770568b92b7a82063989b3ddd9706","name":"Connections Hypothesis Provider API"}],"exclude":[]},"smartAPIID":"68f12100e74342ae0dd5013d5f453194","schema":"3.0.0","provenanceUsesServiceProvider":true,"resolveOutputIDs":true} +1ms
  bte:biothings-explorer-trapi:main SmartAPI Specs read from path: /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/bte-server/data/smartapi_specs.json +0ms
  bte:smartapi-kg:SyncLoader Using single spec sync loader now. +0ms
  bte:smartapi-kg:AllSpecsSyncLoader Fetching from file path: /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/bte-server/data/smartapi_specs.json +0ms
  bte:smartapi-kg:AllSpecsSyncLoader Hits in inputs: true +43ms
  bte:biothings-explorer-trapi:main MetaKG successfully loaded! +47ms
  bte:biothings-explorer-trapi:query_graph (1) Creating edges for manager... +0ms
  bte:biothings-explorer-trapi:query_graph Query node missing categories...Looking for match... +261ms
  bte:biothings-explorer-trapi:QNode (1) Node "n0" has (1) entities at start. +0ms
  bte:biothings-explorer-trapi:QNode (1) Node "n0" expanded initial curie. {"MGI:109384":["MGI:109384"]} +0ms
  bte:biothings-explorer-trapi:query_graph Creating node... +1ms
  bte:biothings-explorer-trapi:QNode (1) Node "n1" has (0) entities at start. +1ms
  bte:biothings-explorer-trapi:QNode "n0" connected to "e01" +0ms
  bte:biothings-explorer-trapi:QNode "n1" connected to "e01" +0ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +0ms
  bte:biothings-explorer-trapi:QEdge (2) Created Edge "e01" Reverse = false +0ms
  bte:biothings-explorer-trapi:main (3) All edges created [{"id":"e01","predicate":["biolink:biomarker_for"],"subject":{"id":"n0","categories":["biolink:Gene"],"expandedCategories":["Gene"],"equivalentIDsUpdated":false,"curie":["MGI:109384"],"expanded_curie":{"MGI:109384":["MGI:109384"]},"entity_count":1,"held_curie":[],"held_expanded":{},"connected_to":{}},"object":{"id":"n1","categories":["biolink:DiseaseOrPhenotypicFeature"],"expandedCategories":["Disease"],"equivalentIDsUpdated":false,"expanded_curie":{},"entity_count":0,"held_curie":[],"held_expanded":{},"connected_to":{}},"expanded_predicates":["biomarker_for"],"qualifier_constraints":[],"reverse":false,"executed":false,"logs":[],"records":[]}]  +264ms
  bte:biothings-explorer-trapi:edge-manager (3) Edge manager is managing 1 qEdges. +0ms
  bte:biothings-explorer-trapi:edge-manager (4) Edges not yet executed = 1 +0ms
  bte:biothings-explorer-trapi:edge-manager (5) Sending next edge 'e01' WITH entity count...(1) +0ms
  bte:biothings-explorer-trapi:edge-manager Checking entity max : (0)--(1) +0ms
  bte:biothings-explorer-trapi:edge-manager 'e01' : (1) --> (0) +1ms
  bte:biothings-explorer-trapi:qedge2btedge Input node is n0 +0ms
  bte:biothings-explorer-trapi:qedge2btedge Output node is n1 +0ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +3ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +0ms
  bte:biothings-explorer-trapi:qedge2btedge KG Filters: {
  bte:biothings-explorer-trapi:qedge2btedge   "input_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Gene"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "output_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Disease"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "predicate": [
  bte:biothings-explorer-trapi:qedge2btedge     "biomarker_for"
  bte:biothings-explorer-trapi:qedge2btedge   ]
  bte:biothings-explorer-trapi:qedge2btedge } +0ms
  bte:biothings-explorer-trapi:edge-manager (3) Edge manager is managing 1 qEdges. +4ms
  bte:biothings-explorer-trapi:edge-manager (4) Edges not yet executed = 1 +0ms
  bte:biothings-explorer-trapi:edge-manager (5) Sending next edge 'e01' WITH entity count...(1) +0ms
  bte:biothings-explorer-trapi:edge-manager Checking entity max : (0)--(1) +0ms
  bte:biothings-explorer-trapi:edge-manager 'e01' : (1) --> (0) +0ms
  bte:biothings-explorer-trapi:edge-manager (5) Executing current edge >> "e01" +1ms
  bte:biothings-explorer-trapi:batch_edge_query Node Update Start +0ms
  bte:biothings-explorer-trapi:nodeUpdateHandler Getting equivalent IDs... +0ms
  bte:biothings-explorer-trapi:nodeUpdateHandler curies: {"Gene":["MGI:109384"]} +0ms
  bte:biothings-explorer-trapi:nodeUpdateHandler Got Edge Equivalent IDs successfully. +267ms
  bte:biothings-explorer-trapi:batch_edge_query Node Update Success +268ms
  bte:biothings-explorer-trapi:batch_edge_query Start to convert qEdges into APIEdges.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input node is n0 +274ms
  bte:biothings-explorer-trapi:qedge2btedge Output node is n1 +0ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +274ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +0ms
  bte:biothings-explorer-trapi:qedge2btedge KG Filters: {
  bte:biothings-explorer-trapi:qedge2btedge   "input_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Gene"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "output_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Disease"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "predicate": [
  bte:biothings-explorer-trapi:qedge2btedge     "biomarker_for"
  bte:biothings-explorer-trapi:qedge2btedge   ]
  bte:biothings-explorer-trapi:qedge2btedge } +0ms
  bte:biothings-explorer-trapi:qedge2btedge 1 APIs being used: ["BioThings AGR API"] +3ms
  bte:biothings-explorer-trapi:qedge2btedge 9 SmartAPI edges are retrieved.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: HGNC +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: RGD +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: HGNC +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: MGI +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: RGD +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: ZFIN +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: FB +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: WB +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: SGD +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +1ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 1 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge BTE found 1 metaKG for this batch. +0ms
  bte:biothings-explorer-trapi:batch_edge_query qEdges are successfully converted into 1 APIEdges.... +5ms
  bte:biothings-explorer-trapi:batch_edge_query Start to query APIEdges.... +0ms
  bte:call-apis:query Resolving ID feature is turned on +0ms
  bte:call-apis:query call-apis: 1 planned queries for edge e01 +0ms
  bte:call-apis:query using template builder +0ms
  bte:call-apis:query query success, transforming hits->records... +0ms
  bte:api-response-transform:index api name BioThings AGR API +0ms
  bte:api-response-transform:index api tags: association,gene,disease,metadata,query,translator,biothings +0ms
  bte:call-apis:query Successful POST https://biothings.ncats.io/agr (1 ID): Gene > biomarker_for > Disease (obtained 2 records, took 205ms) +21ms
  bte:call-apis:query query completes. +235ms
  bte:call-apis:query Total number of records returned for this qEdge is 2 +0ms
  bte:call-apis:query Start to use id resolver module to annotate output ids. +0ms
  bte:call-apis:query id annotation completes +470ms
  bte:call-apis:query qEdge queries complete in 235ms +0ms
  bte:biothings-explorer-trapi:batch_edge_query APIEdges are successfully queried.... +705ms
  bte:biothings-explorer-trapi:batch_edge_query Filtering out "undefined" items (2) records +0ms
  bte:biothings-explorer-trapi:batch_edge_query Total number of records is (2) +0ms
  bte:biothings-explorer-trapi:batch_edge_query Start to update nodes... +0ms
  bte:biothings-explorer-trapi:batch_edge_query Update nodes completed! +0ms
  bte:biothings-explorer-trapi:QEdge (6) Storing records... +710ms
  bte:biothings-explorer-trapi:QEdge (6) Applying Node Constraints to 2 records. +0ms
  bte:biothings-explorer-trapi:QEdge (6) No constraints. Skipping... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating nodes based on edge records... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Disease","PhenotypicFeature","BehavioralFeature","ClinicalFinding","DiseaseOrPhenotypicFeature"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Disease"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n1" saving (2) curies... +987ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Gene"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Gene"] +1ms
  bte:biothings-explorer-trapi:QNode Node "n0" intersecting (1)/(1) curies... +1ms
  bte:biothings-explorer-trapi:QNode Node "n0" kept (1) curies... +0ms
  bte:biothings-explorer-trapi:edge-manager 'e01' Reversed[false] (1)--(2) entities / (2) records. +980ms
  bte:biothings-explorer-trapi:edge-manager 'e01' dropped (0) records. +0ms
  bte:biothings-explorer-trapi:QEdge (6) Storing records... +0ms
  bte:biothings-explorer-trapi:QEdge (6) Applying Node Constraints to 2 records. +0ms
  bte:biothings-explorer-trapi:QEdge (6) No constraints. Skipping... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating nodes based on edge records... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Disease","PhenotypicFeature","BehavioralFeature","ClinicalFinding","DiseaseOrPhenotypicFeature"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Disease"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n1" intersecting (2)/(2) curies... +0ms
  bte:biothings-explorer-trapi:QNode Node "n1" kept (2) curies... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +1ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Gene"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Gene"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n0" intersecting (1)/(1) curies... +1ms
  bte:biothings-explorer-trapi:QNode Node "n0" kept (1) curies... +0ms
  bte:biothings-explorer-trapi:edge-manager Updating all other edges... +1ms
  bte:biothings-explorer-trapi:edge-manager (10) Edge successfully queried. +0ms
  bte:biothings-explorer-trapi:edge-manager (11) Collecting records... +0ms
  bte:biothings-explorer-trapi:edge-manager (11) 'e01' keeps (2) records! +0ms
  bte:biothings-explorer-trapi:edge-manager ---------- +0ms
  bte:biothings-explorer-trapi:edge-manager (12) Collected records for: ["e01"]! +0ms
  bte:biothings-explorer-trapi:edge-manager (12) Collected (2) records! +0ms
  bte:biothings-explorer-trapi:edge-manager (13) Edge Manager reporting combined records... +0ms
  bte:biothings-explorer-trapi:Graph Updating BTE Graph now. +0ms
  bte:biothings-explorer-trapi:edge-manager (13) Edge Manager reporting organized records... +1ms
  bte:biothings-explorer-trapi:QueryResult Updating query results now! +0ms
  bte:biothings-explorer-trapi:QueryResult Nodes with "is_set": [] +0ms
  bte:biothings-explorer-trapi:QueryResult initialQEdgeID: e01, initialQNodeIDToMatch: n0 +0ms
  bte:biothings-explorer-trapi:QueryResult result ID: n0-NCBIGene:11910_&_n1-MONDO:0008315 has 1 +0ms
  bte:biothings-explorer-trapi:QueryResult result ID: n0-NCBIGene:11910_&_n1-MONDO:0006052 has 1 +1ms
  bte:biothings-explorer-trapi:QueryResult Did not score results for this endpoint. +0ms
  bte:biothings-explorer-trapi:Graph pruning BTEGraph nodes/edges... +4ms
  bte:biothings-explorer-trapi:Graph pruned 0 nodes and 0 edges from BTEGraph. +0ms
  bte:biothings-explorer-trapi:main (14) TRAPI query finished. +993ms
  bte:biothings-explorer-trapi:main Expanded ids for node n0: (2 ids -> 2 ids) +50s
  bte:biothings-explorer-trapi:main Automat-biolink(Trapi v1.4.0) not found in smartapi registry +63ms
  bte:biothings-explorer-trapi:main Start to load metakg. +213ms
  bte:biothings-explorer-trapi:main Query options are: {"apiList":{"include":[{"id":"d22b657426375a5295e7da8a303b9893","name":"BioLink API"},{"id":"0212611d1c670f9107baf00b77f0889a","name":"CTD API","primarySource":true},{"id":"43af91b3d7cae43591083bff9d75c6dd","name":"EBI Proteins API"},{"id":"dca415f2d792976af9d642b7e73f7a41","name":"LitVar API"},{"id":"1f277e1563fcfd124bfae2cc3c4bcdec","name":"QuickGO API"},{"id":"1c056ffc7ed0dd1229e71c4752239465","name":"Ontology Lookup Service API"},{"id":"38e9e5169a72aee3659c9ddba956790d","name":"BioThings BindingDB API"},{"id":"55a223c6c6e0291dbd05f2faf27d16f4","name":"BioThings BioPlanet Pathway-Disease API"},{"id":"b99c6dd64abcefe87dcd0a51c249ee6d","name":"BioThings BioPlanet Pathway-Gene API"},{"id":"00fb85fc776279163199e6c50f6ddfc6","name":"BioThings DDInter API"},{"id":"e3edd325c76f2992a111b43a907a4870","name":"BioThings DGIdb API"},{"id":"a7f784626a426d054885a5f33f17d3f8","name":"BioThings DISEASES API"},{"id":"1f47552dabd67351d4c625adb0a10d00","name":"BioThings EBIgene2phenotype API"},{"id":"cc857d5b7c8b7609b5bbb38ff990bfff","name":"BioThings GO Biological Process API"},{"id":"f339b28426e7bf72028f60feefcd7465","name":"BioThings GO Cellular Component API"},{"id":"34bad236d77bea0a0ee6c6cba5be54a6","name":"BioThings GO Molecular Function API"},{"id":"316eab811fd9ef1097df98bcaa9f7361","name":"BioThings GTRx API"},{"id":"a5b0ec6bfde5008984d4b6cde402d61f","name":"BioThings HPO API"},{"id":"32f36164fabed5d3abe6c2fd899c9418","name":"BioThings IDISK API"},{"id":"77ed27f111262d0289ed4f4071faa619","name":"BioThings MGIgene2phenotype API"},{"id":"edeb26858bd27d0322af93e7a9e08761","name":"BioThings PFOCR API"},{"id":"b772ebfbfa536bba37764d7fddb11d6f","name":"BioThings RARe-SOURCE API"},{"id":"03283cc2b21c077be6794e1704b1d230","name":"BioThings Rhea API"},{"id":"1d288b3a3caf75d541ffaae3aab386c8","name":"BioThings SEMMEDDB API"},{"id":"b48c34df08d16311e3bca06b135b828d","name":"BioThings SuppKG API"},{"id":"e481efd21f8e8c1deac05662439c2294","name":"Biothings Therapeutic Target Database API"},{"id":"ec6d76016ef40f284359d17fbf78df20","name":"BioThings UBERON API"},{"id":"8f08d1446e0bb9c2b323713ce83e2bd3","name":"MyChem.info API"},{"id":"671b45c0301c8624abbd26ae78449ca2","name":"MyDisease.info API"},{"id":"59dce17363dce279d389100834e43648","name":"MyGene.info API"},{"id":"09c8782d9f4027712e65b95424adba79","name":"MyVariant.info API"},{"id":"adf20dd6ff23dfe18e8e012bde686e31","name":"Multiomics BigGIM-DrugResponse KP API"},{"id":"08a5ddcde71b4bf838327ef469076acd","name":"Multiomics ClinicalTrials KP"},{"id":"d86a24f6027ffe778f84ba10a7a1861a","name":"Multiomics EHR Risk KP API"},{"id":"02af7d098ab304e80d6f4806c3527027","name":"Multiomics Wellness KP API"},{"id":"978fe380a147a8641caf72320862697b","name":"Text Mining Targeted Association API"},{"id":"ef0656900ff73f861611bcad87a94bce","name":"Automat-biolink(Trapi v1.4.0)"},{"id":"97da45e75266b021fae885735befad07","name":"Automat-ctd(Trapi v1.4.0)"},{"id":"a80b9c70e756453d1ce8971b59fe1778","name":"Automat-drug-central(Trapi v1.4.0)"},{"id":"2575e053d0a631433b447995e1bc9602","name":"Automat-gtex(Trapi v1.4.0)"},{"id":"387f7a2c21656ddfcce5ccf9ea459049","name":"Automat-gtopdb(Trapi v1.4.0)"},{"id":"cd9fc0ca8cc6d9f56bd56a34766de791","name":"Automat-gwas-catalog(Trapi v1.4.0)"},{"id":"8a1e2c2eade9fe3a932ba1dbb7f85688","name":"Automat-hetio(Trapi v1.4.0)"},{"id":"067d3a847117c6f42896cc8cd140a704","name":"Automat-hgnc(Trapi v1.4.0)"},{"id":"0658e8749b9601a5faba5157ba12eb06","name":"Automat-hmdb(Trapi v1.4.0)"},{"id":"43cf256c660cc5bdeac23fdd3063d474","name":"Automat-human-goa(Trapi v1.4.0)"},{"id":"76a164ff43e7ab39a5b98a782f6361bf","name":"Automat-icees-kg(Trapi v1.4.0)"},{"id":"0b0a4d48ccd9ad2fd34ee53c34f87e94","name":"Automat-intact(Trapi v1.4.0)"},{"id":"26ca4939d437c411bcb65b85a9dc2b99","name":"Automat-panther(Trapi v1.4.0)"},{"id":"1c71f68839a44b1b857e79ae7f7e3381","name":"Automat-pharos(Trapi v1.4.0)"},{"id":"465ff6de7ddf35ca8b2df6c0b01e6554","name":"Automat-viral-proteome(Trapi v1.4.0)"},{"id":"af364143267ad5235bf78c1511223875","name":"COHD TRAPI"},{"id":"23f770568b92b7a82063989b3ddd9706","name":"Connections Hypothesis Provider API"}],"exclude":[]},"smartAPIID":"68f12100e74342ae0dd5013d5f453194","schema":"3.0.0","provenanceUsesServiceProvider":true,"resolveOutputIDs":true} +0ms
  bte:biothings-explorer-trapi:main SmartAPI Specs read from path: /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/bte-server/data/smartapi_specs.json +0ms
  bte:smartapi-kg:SyncLoader Using single spec sync loader now. +51s
  bte:smartapi-kg:AllSpecsSyncLoader Fetching from file path: /Users/colleenxu/Desktop/BTE_typescript_pnpm/biothings_explorer/packages/bte-server/data/smartapi_specs.json +51s
  bte:smartapi-kg:AllSpecsSyncLoader Hits in inputs: true +54ms
  bte:biothings-explorer-trapi:main MetaKG successfully loaded! +56ms
  bte:biothings-explorer-trapi:query_graph (1) Creating edges for manager... +51s
  bte:biothings-explorer-trapi:query_graph Node categories found. Assigning value: {"categories":["biolink:Gene","biolink:Protein"],"ids":["MGI:109384","MGI:109393"]} +269ms
  bte:biothings-explorer-trapi:QNode (1) Node "n0" has (2) entities at start. +50s
  bte:biothings-explorer-trapi:QNode (1) Node "n0" expanded initial curie. {"MGI:109384":["MGI:109384"],"MGI:109393":["MGI:109393"]} +0ms
  bte:biothings-explorer-trapi:query_graph Creating node... +0ms
  bte:biothings-explorer-trapi:QNode (1) Node "n1" has (0) entities at start. +1ms
  bte:biothings-explorer-trapi:QNode "n0" connected to "e01" +0ms
  bte:biothings-explorer-trapi:QNode "n1" connected to "e01" +0ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +50s
  bte:biothings-explorer-trapi:QEdge (2) Created Edge "e01" Reverse = false +0ms
  bte:biothings-explorer-trapi:main (3) All edges created [{"id":"e01","predicate":["biolink:biomarker_for"],"subject":{"id":"n0","categories":["biolink:Gene","biolink:Protein"],"expandedCategories":["Gene","ProteinIsoform","Protein"],"equivalentIDsUpdated":false,"curie":["MGI:109384","MGI:109393"],"expanded_curie":{"MGI:109384":["MGI:109384"],"MGI:109393":["MGI:109393"]},"entity_count":2,"held_curie":[],"held_expanded":{},"connected_to":{}},"object":{"id":"n1","categories":["biolink:DiseaseOrPhenotypicFeature"],"expandedCategories":["Disease"],"equivalentIDsUpdated":false,"expanded_curie":{},"entity_count":0,"held_curie":[],"held_expanded":{},"connected_to":{}},"expanded_predicates":["biomarker_for"],"qualifier_constraints":[],"reverse":false,"executed":false,"logs":[],"records":[]}]  +270ms
  bte:biothings-explorer-trapi:edge-manager (3) Edge manager is managing 1 qEdges. +50s
  bte:biothings-explorer-trapi:edge-manager (4) Edges not yet executed = 1 +0ms
  bte:biothings-explorer-trapi:edge-manager (5) Sending next edge 'e01' WITH entity count...(2) +0ms
  bte:biothings-explorer-trapi:edge-manager Checking entity max : (0)--(2) +0ms
  bte:biothings-explorer-trapi:edge-manager 'e01' : (2) --> (0) +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input node is n0 +51s
  bte:biothings-explorer-trapi:qedge2btedge Output node is n1 +0ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +1ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +0ms
  bte:biothings-explorer-trapi:qedge2btedge KG Filters: {
  bte:biothings-explorer-trapi:qedge2btedge   "input_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Gene",
  bte:biothings-explorer-trapi:qedge2btedge     "ProteinIsoform",
  bte:biothings-explorer-trapi:qedge2btedge     "Protein"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "output_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Disease"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "predicate": [
  bte:biothings-explorer-trapi:qedge2btedge     "biomarker_for"
  bte:biothings-explorer-trapi:qedge2btedge   ]
  bte:biothings-explorer-trapi:qedge2btedge } +0ms
  bte:biothings-explorer-trapi:edge-manager (3) Edge manager is managing 1 qEdges. +2ms
  bte:biothings-explorer-trapi:edge-manager (4) Edges not yet executed = 1 +0ms
  bte:biothings-explorer-trapi:edge-manager (5) Sending next edge 'e01' WITH entity count...(2) +0ms
  bte:biothings-explorer-trapi:edge-manager Checking entity max : (0)--(2) +0ms
  bte:biothings-explorer-trapi:edge-manager 'e01' : (2) --> (0) +0ms
  bte:biothings-explorer-trapi:edge-manager (5) Executing current edge >> "e01" +1ms
  bte:biothings-explorer-trapi:batch_edge_query Node Update Start +50s
  bte:biothings-explorer-trapi:nodeUpdateHandler Getting equivalent IDs... +51s
  bte:biothings-explorer-trapi:nodeUpdateHandler curies: {"Gene":["MGI:109384","MGI:109393"],"ProteinIsoform":["MGI:109384","MGI:109393"],"Protein":["MGI:109384","MGI:109393"]} +0ms
  bte:biomedical-id-resolver:SRI SRI resolved type 'Gene' doesn't match input semantic type 'ProteinIsoform' for curie 'NCBIGene:11910'. Adding entry for 'ProteinIsoform'. +0ms
  bte:biomedical-id-resolver:SRI SRI resolved type 'Gene' doesn't match input semantic type 'ProteinIsoform' for curie 'NCBIGene:20533'. Adding entry for 'ProteinIsoform'. +0ms
  bte:biomedical-id-resolver:SRI SRI resolved type 'Gene' doesn't match input semantic type 'Protein' for curie 'NCBIGene:11910'. Adding entry for 'Protein'. +0ms
  bte:biomedical-id-resolver:SRI SRI resolved type 'Gene' doesn't match input semantic type 'Protein' for curie 'NCBIGene:20533'. Adding entry for 'Protein'. +0ms
  bte:biothings-explorer-trapi:nodeUpdateHandler Got Edge Equivalent IDs successfully. +267ms
  bte:biothings-explorer-trapi:batch_edge_query Node Update Success +268ms
  bte:biothings-explorer-trapi:batch_edge_query Start to convert qEdges into APIEdges.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input node is n0 +271ms
  bte:biothings-explorer-trapi:qedge2btedge Output node is n1 +0ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +271ms
  bte:biothings-explorer-trapi:QEdge Expanded edges: biomarker_for +0ms
  bte:biothings-explorer-trapi:qedge2btedge KG Filters: {
  bte:biothings-explorer-trapi:qedge2btedge   "input_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Gene",
  bte:biothings-explorer-trapi:qedge2btedge     "ProteinIsoform",
  bte:biothings-explorer-trapi:qedge2btedge     "Protein"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "output_type": [
  bte:biothings-explorer-trapi:qedge2btedge     "Disease"
  bte:biothings-explorer-trapi:qedge2btedge   ],
  bte:biothings-explorer-trapi:qedge2btedge   "predicate": [
  bte:biothings-explorer-trapi:qedge2btedge     "biomarker_for"
  bte:biothings-explorer-trapi:qedge2btedge   ]
  bte:biothings-explorer-trapi:qedge2btedge } +0ms
  bte:biothings-explorer-trapi:qedge2btedge 1 APIs being used: ["BioThings AGR API"] +2ms
  bte:biothings-explorer-trapi:qedge2btedge 9 SmartAPI edges are retrieved.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: HGNC +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: RGD +1ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: HGNC +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: MGI +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: RGD +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: ZFIN +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: FB +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: WB +0ms
  bte:biothings-explorer-trapi:qedge2btedge Input prefix: SGD +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 1 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge 0 metaKG are created.... +0ms
  bte:biothings-explorer-trapi:qedge2btedge BTE found 1 metaKG for this batch. +0ms
  bte:biothings-explorer-trapi:batch_edge_query qEdges are successfully converted into 1 APIEdges.... +3ms
  bte:biothings-explorer-trapi:batch_edge_query Start to query APIEdges.... +0ms
  bte:call-apis:query Resolving ID feature is turned on +51s
  bte:call-apis:query call-apis: 1 planned queries for edge e01 +0ms
  bte:call-apis:query using template builder +51s
  bte:call-apis:query query success, transforming hits->records... +51s
  bte:api-response-transform:index api name BioThings AGR API +51s
  bte:api-response-transform:index api tags: association,gene,disease,metadata,query,translator,biothings +0ms
  bte:call-apis:query Successful POST https://biothings.ncats.io/agr (2 IDs): Gene > biomarker_for > Disease (obtained 7 records, took 191ms) +20ms
  bte:call-apis:query query completes. +218ms
  bte:call-apis:query Total number of records returned for this qEdge is 7 +0ms
  bte:call-apis:query Start to use id resolver module to annotate output ids. +0ms
  bte:call-apis:query id annotation completes +488ms
  bte:call-apis:query qEdge queries complete in 217ms +0ms
  bte:biothings-explorer-trapi:batch_edge_query APIEdges are successfully queried.... +706ms
  bte:biothings-explorer-trapi:batch_edge_query Filtering out "undefined" items (7) records +0ms
  bte:biothings-explorer-trapi:batch_edge_query Total number of records is (7) +0ms
  bte:biothings-explorer-trapi:batch_edge_query Start to update nodes... +0ms
  bte:biothings-explorer-trapi:batch_edge_query Update nodes completed! +0ms
  bte:biothings-explorer-trapi:QEdge (6) Storing records... +709ms
  bte:biothings-explorer-trapi:QEdge (6) Applying Node Constraints to 7 records. +1ms
  bte:biothings-explorer-trapi:QEdge (6) No constraints. Skipping... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating nodes based on edge records... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Disease","PhenotypicFeature","BehavioralFeature","ClinicalFinding","DiseaseOrPhenotypicFeature"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Disease"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n1" saving (7) curies... +982ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Gene","ProteinIsoform","Protein"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Gene"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n0" intersecting (2)/(1) curies... +0ms
  bte:biothings-explorer-trapi:QNode Node "n0" kept (1) curies... +1ms
  bte:biothings-explorer-trapi:edge-manager 'e01' Reversed[false] (1)--(7) entities / (7) records. +979ms
  bte:biothings-explorer-trapi:edge-manager 'e01' dropped (5) records. +0ms
  bte:biothings-explorer-trapi:QEdge (6) Storing records... +1ms
  bte:biothings-explorer-trapi:QEdge (6) Applying Node Constraints to 2 records. +0ms
  bte:biothings-explorer-trapi:QEdge (6) No constraints. Skipping... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating nodes based on edge records... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Disease","PhenotypicFeature","BehavioralFeature","ClinicalFinding","DiseaseOrPhenotypicFeature"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Disease"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n1" intersecting (7)/(2) curies... +0ms
  bte:biothings-explorer-trapi:QNode Node "n1" kept (2) curies... +0ms
  bte:biothings-explorer-trapi:QEdge (7) Updating Entities in "e01" +0ms
  bte:biothings-explorer-trapi:QEdge (7) Collecting Types: "["Gene","ProteinIsoform","Protein"]" +0ms
  bte:biothings-explorer-trapi:QEdge Collected entity ids in records: ["Gene"] +0ms
  bte:biothings-explorer-trapi:QNode Node "n0" intersecting (1)/(1) curies... +0ms
  bte:biothings-explorer-trapi:QNode Node "n0" kept (1) curies... +0ms
  bte:biothings-explorer-trapi:edge-manager Updating all other edges... +0ms
  bte:biothings-explorer-trapi:edge-manager (10) Edge successfully queried. +1ms
  bte:biothings-explorer-trapi:edge-manager (11) Collecting records... +0ms
  bte:biothings-explorer-trapi:edge-manager (11) 'e01' keeps (2) records! +0ms
  bte:biothings-explorer-trapi:edge-manager ---------- +0ms
  bte:biothings-explorer-trapi:edge-manager (12) Collected records for: ["e01"]! +0ms
  bte:biothings-explorer-trapi:edge-manager (12) Collected (2) records! +0ms
  bte:biothings-explorer-trapi:edge-manager (13) Edge Manager reporting combined records... +0ms
  bte:biothings-explorer-trapi:Graph Updating BTE Graph now. +51s
  bte:biothings-explorer-trapi:edge-manager (13) Edge Manager reporting organized records... +1ms
  bte:biothings-explorer-trapi:QueryResult Updating query results now! +51s
  bte:biothings-explorer-trapi:QueryResult Nodes with "is_set": [] +0ms
  bte:biothings-explorer-trapi:QueryResult initialQEdgeID: e01, initialQNodeIDToMatch: n0 +1ms
  bte:biothings-explorer-trapi:QueryResult result ID: n0-NCBIGene:11910_&_n1-MONDO:0008315 has 1 +0ms
  bte:biothings-explorer-trapi:QueryResult result ID: n0-NCBIGene:11910_&_n1-MONDO:0006052 has 1 +0ms
  bte:biothings-explorer-trapi:QueryResult Did not score results for this endpoint. +0ms
  bte:biothings-explorer-trapi:Graph pruning BTEGraph nodes/edges... +3ms
  bte:biothings-explorer-trapi:Graph pruned 1 nodes and 0 edges from BTEGraph. +0ms
  bte:biothings-explorer-trapi:main (14) TRAPI query finished. +988ms
^C ELIFECYCLE  Command failed.
 ELIFECYCLE  Command failed.
 ELIFECYCLE  Command failed.

➜  biothings_explorer git:(dev) ✗                                                                           [29/11/23| 4:00PM]