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MyGene.info documentation

Introduction

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  `MyGene.info <http://mygene.info>`_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with **simplicity** and **performance** emphasized. A typical use case is to use it to power a web application which requires querying genes and obtaining common gene annotations. For example, `MyGene.info <http://mygene.info>`_ services are used to power `BioGPS <http://biogps.org>`_.

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#twitter-widget-0 { width: 100% !important; height: 380px !important; border: solid thin gray; margin-top: 2em; } Tweets by @mygeneinfo

What's new in v3 API

  • Refseq accession number now contains version
  • "ensembl", "refseq" and "accession" contains associations between RNA and protein
  • Better mapping between Ensembl and Entrez gene IDs
  • JSON structure slightly changed
  • and more bugfixes

You can read more details about this version on our blog

Migration guide from v2 to v3 API

Still want to stick with v2 API for a while? It's still there: v2 API, but annotation data there won't be updated any more.

Documentation

.. toctree::
   :maxdepth: 3

   Try it live on interactive API page <http://mygene.info/v3/api>
   doc/migration_from_v2
   doc/data
   doc/release_changes
   doc/query_service
   doc/annotation_service
   doc/response_status_codes
   doc/usage_demo
   doc/packages
   terms


How to cite

See citation page here: http://mygene.info/citation/

FAQ

See FAQ page here: http://mygene.info/faq/

Related links

Contact us