Re-index doesn't resume after restart

[merceyz]

Describe the issue

Started Bitcoin Core earlier today to sync up with the network.
After syncing for a while (I was 15 weeks behind) I got an error message I can't remember, after clicking Ok on it I get something along the lines of
"this application has requested the run time to terminate in an unusual way. Please contact applications support team for more info"
Clicked Ok then Bitcoin Core crashed, same happened every time I started it after that.
Decided to re-index to see if that would fix the problem, however after re-indexing up until sometime in 2015 it got stuck so I restarted it which caused it to start re-indexing from the start instead of resuming.

Can you reliably reproduce the issue?

Yes

If so, please list the steps to reproduce below:

1. Launch bitcoin-qt.exe with the argument -reindex once
2. Close at any point during the re-index
3. Start again

Expected behaviour

Continue from where it left off

Actual behaviour

Started re-indexing from the beginning.
However the GUI claims it resumes from where it left of, but the log says otherwise

What version of bitcoin-core are you using?

https://bitcoin.org/bin/bitcoin-core-0.14.2/

Machine specs:

• OS: Windows 7 x64
• CPU: Intel Core i7 2600 @ 3.40GHz
• RAM: 16 GB
• Disk size: 931 GB (1TB drive)
• Disk Type (HD/SDD): HD

Any extra information that might be useful in the debugging process.

2017-06-21 00:01:37 Loaded 209 blocks from external file in 8149ms
2017-06-21 00:01:37 Reindexing block file blk00514.dat...
2017-06-21 00:01:43 Loaded 148 blocks from external file in 6376ms
2017-06-21 00:01:43 Reindexing block file blk00515.dat...
2017-06-21 00:01:45 tor: Thread interrupt
2017-06-21 00:01:45 opencon thread exit
2017-06-21 00:01:45 addcon thread exit
2017-06-21 00:01:45 msghand thread exit
2017-06-21 00:01:45 net thread exit
2017-06-21 00:01:45 torcontrol thread exit
2017-06-21 00:01:46 scheduler thread interrupt
2017-06-21 00:01:46 Shutdown: In progress...
2017-06-21 00:01:46 Shutdown: done
2017-06-21 00:02:29 



















2017-06-21 00:02:29 Bitcoin version v0.14.2
2017-06-21 00:02:29 InitParameterInteraction: parameter interaction: -whitelistforcerelay=1 -> setting -whitelistrelay=1
2017-06-21 00:02:29 Assuming ancestors of block 00000000000000000013176bf8d7dfeab4e1db31dc93bc311b436e82ab226b90 have valid signatures.
2017-06-21 00:02:29 GUI: "registerShutdownBlockReason: Successfully registered: Bitcoin Core didn't yet exit safely..."
2017-06-21 00:02:29 Default data directory C:\Users\X\AppData\Roaming\Bitcoin
2017-06-21 00:02:29 Using data directory E:\Bitcoin\Data
2017-06-21 00:02:29 Using config file E:\Bitcoin\Data\bitcoin.conf
2017-06-21 00:02:29 Using at most 125 automatic connections (2048 file descriptors available)
2017-06-21 00:02:29 Using 32 MiB out of 32 requested for signature cache, able to store 1048576 elements
2017-06-21 00:02:29 Using 4 threads for script verification
2017-06-21 00:02:29 Using BerkeleyDB version Berkeley DB 4.8.30: (April  9, 2010)
2017-06-21 00:02:29 scheduler thread start
2017-06-21 00:02:29 Using wallet wallet.dat
2017-06-21 00:02:29 init message: Verifying wallet...
2017-06-21 00:02:29 CDBEnv::Open: LogDir=E:\Bitcoin\Data\database ErrorFile=E:\Bitcoin\Data\db.log
2017-06-21 00:02:29 Bound to [::]:8333
2017-06-21 00:02:29 Bound to 0.0.0.0:8333
2017-06-21 00:02:29 Cache configuration:
2017-06-21 00:02:29 * Using 2.0MiB for block index database
2017-06-21 00:02:29 * Using 8.0MiB for chain state database
2017-06-21 00:02:29 * Using 4086.0MiB for in-memory UTXO set (plus up to 286.1MiB of unused mempool space)
2017-06-21 00:02:29 init message: Loading block index...
2017-06-21 00:02:29 Opening LevelDB in E:\Bitcoin\Data\blocks\index
2017-06-21 00:02:29 Opened LevelDB successfully
2017-06-21 00:02:29 Using obfuscation key for E:\Bitcoin\Data\blocks\index: 0000000000000000
2017-06-21 00:02:29 Opening LevelDB in E:\Bitcoin\Data\chainstate
2017-06-21 00:02:29 Opened LevelDB successfully
2017-06-21 00:02:29 Using obfuscation key for E:\Bitcoin\Data\chainstate: abad9e8260a8bd97
2017-06-21 00:02:35 LoadBlockIndexDB: last block file = 511
2017-06-21 00:02:35 LoadBlockIndexDB: last block file info: CBlockFileInfo(blocks=130, size=123512829, heights=409935...410743, time=2016-05-02...2016-05-08)
2017-06-21 00:02:35 Checking all blk files are present...
2017-06-21 00:02:35 LoadBlockIndexDB: transaction index disabled
2017-06-21 00:02:35 LoadBlockIndexDB: hashBestChain=00000000000000000670942d117db959504fe469618e71ca986a6345ca9b8210 height=405585 date=2016-04-03 18:48:49 progress=0.519735
2017-06-21 00:02:35 init message: Verifying blocks...
2017-06-21 00:02:35 Verifying last 6 blocks at level 3
2017-06-21 00:02:35 [0%]...[16%]...[33%]...[50%]...[66%]...[83%]...[99%]...[DONE].
2017-06-21 00:02:47 No coin database inconsistencies in last 7 blocks (10364 transactions)
2017-06-21 00:02:47  block index           18301ms
2017-06-21 00:02:47 init message: Loading wallet...
2017-06-21 00:02:47 nFileVersion = 140200
2017-06-21 00:02:47 Keys: 0 plaintext, 212 encrypted, 212 w/ metadata, 212 total
2017-06-21 00:02:48  wallet                  117ms
2017-06-21 00:02:48 setKeyPool.size() = 100
2017-06-21 00:02:48 mapWallet.size() = 38
2017-06-21 00:02:48 mapAddressBook.size() = 12
2017-06-21 00:02:48 mapBlockIndex.size() = 410744
2017-06-21 00:02:48 nBestHeight = 405585
2017-06-21 00:02:48 Reindexing block file blk00000.dat...
2017-06-21 00:02:48 torcontrol thread start
2017-06-21 00:02:48 AddLocal([2001:4643:6fb3:0:7d3c:cf1f:e389:653c]:8333,1)
2017-06-21 00:02:48 Discover: X - 2001:4643:6fb3:0:7d3c:cf1f:e389:653c
2017-06-21 00:02:48 AddLocal([2001:4643:6fb3:0:9dab:e340:cf62:c3ca]:8333,1)
2017-06-21 00:02:48 Discover: X - 2001:4643:6fb3:0:9dab:e340:cf62:c3ca
2017-06-21 00:02:48 AddLocal([2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:8333,1)
2017-06-21 00:02:48 Discover: X - 2001:0:9d38:90d7:1817:1e4f:af2b:51ee
2017-06-21 00:02:48 init message: Loading addresses...
2017-06-21 00:02:48 Loaded 63210 addresses from peers.dat  304ms
2017-06-21 00:02:48 init message: Loading banlist...
2017-06-21 00:02:48 init message: Starting network threads...
2017-06-21 00:02:48 net thread start
2017-06-21 00:02:48 dnsseed thread start
2017-06-21 00:02:48 addcon thread start
2017-06-21 00:02:48 opencon thread start
2017-06-21 00:02:48 init message: Done loading
2017-06-21 00:02:48 msghand thread start
2017-06-21 00:02:59 Loading addresses from DNS seeds (could take a while)
2017-06-21 00:03:02 Pre-allocating up to position 0x100000 in rev00487.dat
2017-06-21 00:03:02 UpdateTip: new best=0000000000000000058eb9e0bcf8fd7c61867400b9599391367c9b3a0e7d9b0c height=405586 version=0x00000004 log2_work=84.418983 tx=120057643 date='2016-04-03 18:55:34' progress=0.519742 cache=10.8MiB(4831tx)
2017-06-21 00:03:02 GUI: Platform customization: "windows"
2017-06-21 00:03:02 GUI: PaymentServer::LoadRootCAs: Loaded  57  root certificates
2017-06-21 00:03:10 162 addresses found from DNS seeds
2017-06-21 00:03:10 dnsseed thread exit
2017-06-21 00:03:20 UpdateTip: new best=0000000000000000010aede2df48857cfb91d0ea4e8fdc422f25730c643f5228 height=405587 version=0x00000004 log2_work=84.419023 tx=120059084 date='2016-04-03 19:06:16' progress=0.519749 cache=22.0MiB(9310tx)
2017-06-21 00:03:20 receive version message: /Satoshi:0.13.1/: version 70014, blocks=472181, us=80.212.174.17:60474, peer=0
2017-06-21 00:03:20 UpdateTip: new best=0000000000000000039b905313591b2f2faad80beb2ed2b9a0fe66d1d736741e height=405588 version=0x00000004 log2_work=84.419063 tx=120059085 date='2016-04-03 19:06:47' progress=0.519749 cache=22.0MiB(9311tx)
2017-06-21 00:03:46 UpdateTip: new best=00000000000000000209bd38464b503edbf85f5a0c38303a3ec604dabcb1ea12 height=405589 version=0x00000004 log2_work=84.419103 tx=120060469 date='2016-04-03 19:14:58' progress=0.519754 cache=57.8MiB(14951tx)
2017-06-21 00:03:46 ProcessMessages(version, 122 bytes) FAILED peer=1
2017-06-21 00:04:05 UpdateTip: new best=0000000000000000059c8097b763eb7a87892beab1a7f98273a57068c9a3e736 height=405590 version=0x00000004 log2_work=84.419143 tx=120061294 date='2016-04-03 19:20:37' progress=0.519758 cache=64.0MiB(18465tx)
2017-06-21 00:04:05 receive version message: /Satoshi:0.14.0/: version 70015, blocks=472182, us=[2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:56628, peer=2
2017-06-21 00:04:16 UpdateTip: new best=0000000000000000056f972f0dea3079d2e6bd1baa5f93d757e176858fa2f4bd height=405591 version=0x00000004 log2_work=84.419183 tx=120062270 date='2016-04-03 19:26:40' progress=0.519762 cache=70.5MiB(21895tx)
2017-06-21 00:04:17 UpdateTip: new best=0000000000000000054659a4969a4ea4f90325b805646922a6a44b9c5cf45378 height=405592 version=0x00000004 log2_work=84.419223 tx=120062356 date='2016-04-03 19:27:28' progress=0.519762 cache=70.7MiB(22044tx)
2017-06-21 00:04:27 UpdateTip: new best=000000000000000002ab83f75ac5797cc4987b0524c1697aba2c98f631ec3d5f height=405593 version=0x00000004 log2_work=84.419263 tx=120063748 date='2016-04-03 19:37:56' progress=0.519768 cache=75.0MiB(25215tx)
2017-06-21 00:04:36 UpdateTip: new best=000000000000000005df5571cfedc8f991aae18a4057791b926f6896782b66fd height=405594 version=0x00000004 log2_work=84.419303 tx=120064799 date='2016-04-03 19:46:28' progress=0.519773 cache=76.1MiB(28449tx)
2017-06-21 00:04:41 Pre-allocating up to position 0x700000 in rev00483.dat
<-- This goes on for a while ->
2017-06-21 00:59:51 UpdateTip: new best=000000000000000004ffc9417dc39f5a12e4df1dd094921784873e0a2e66c9d2 height=410738 version=0x20000000 log2_work=84.620178 tx=127503372 date='2016-05-08 00:42:17' progress=0.551950 cache=1481.0MiB(1554641tx)
2017-06-21 00:59:51 UpdateTip: new best=00000000000000000465698577edc4c56a98faeb1f6242f023278a1c8f0943c2 height=410739 version=0x00000004 log2_work=84.620215 tx=127504701 date='2016-05-08 00:52:42' progress=0.551955 cache=1481.1MiB(1555331tx)
2017-06-21 00:59:51 UpdateTip: new best=0000000000000000000ba7d17ba346f4657cbb237cc56eb95e6a23fb1cc98357 height=410740 version=0x00000004 log2_work=84.620253 tx=127508133 date='2016-05-08 01:39:38' progress=0.551970 cache=1481.6MiB(1557582tx)
2017-06-21 00:59:52 UpdateTip: new best=0000000000000000041fddb3475d37c7ccbaaf7ca852053dabf0bfe3169ed22e height=410741 version=0x30000000 log2_work=84.62029 tx=127510323 date='2016-05-08 01:51:05' progress=0.551980 cache=1482.2MiB(1559142tx)
2017-06-21 00:59:52 Pre-allocating up to position 0xa00000 in rev00511.dat
2017-06-21 00:59:52 UpdateTip: new best=000000000000000004926acdcc160aabf4a0d4e3fb0efa7d02c7257fc708dd48 height=410742 version=0x00000004 log2_work=84.620327 tx=127513275 date='2016-05-08 02:10:20' progress=0.551993 cache=1482.6MiB(1561082tx)
2017-06-21 00:59:53 UpdateTip: new best=00000000000000000326a125b9bb55f5c6c4b46cdf7e354a9d42a0eaaa65a932 height=410743 version=0x20000000 log2_work=84.620364 tx=127515774 date='2016-05-08 02:32:02' progress=0.552003 cache=1483.0MiB(1562453tx)
2017-06-21 00:59:59 Reindexing block file blk00001.dat...
<-- This goes on for a while ->
2017-06-21 01:25:14 Reindexing block file blk00338.dat...
2017-06-21 01:25:15 tor: Thread interrupt
2017-06-21 01:25:15 opencon thread exit
2017-06-21 01:25:15 addcon thread exit
2017-06-21 01:25:15 net thread exit
2017-06-21 01:25:15 torcontrol thread exit
2017-06-21 01:25:15 scheduler thread interrupt
2017-06-21 01:25:15 Shutdown: In progress...
2017-06-21 01:25:15 msghand thread exit
2017-06-21 01:25:46 Shutdown: done
2017-06-21 01:27:21 



















2017-06-21 01:27:21 Bitcoin version v0.14.2
2017-06-21 01:27:21 InitParameterInteraction: parameter interaction: -whitelistforcerelay=1 -> setting -whitelistrelay=1
2017-06-21 01:27:22 Assuming ancestors of block 00000000000000000013176bf8d7dfeab4e1db31dc93bc311b436e82ab226b90 have valid signatures.
2017-06-21 01:27:22 GUI: "registerShutdownBlockReason: Successfully registered: Bitcoin Core didn't yet exit safely..."
2017-06-21 01:27:23 Default data directory C:\Users\X\AppData\Roaming\Bitcoin
2017-06-21 01:27:23 Using data directory E:\Bitcoin\Data
2017-06-21 01:27:23 Using config file E:\Bitcoin\Data\bitcoin.conf
2017-06-21 01:27:23 Using at most 125 automatic connections (2048 file descriptors available)
2017-06-21 01:27:23 Using 32 MiB out of 32 requested for signature cache, able to store 1048576 elements
2017-06-21 01:27:23 Using 4 threads for script verification
2017-06-21 01:27:23 Using BerkeleyDB version Berkeley DB 4.8.30: (April  9, 2010)
2017-06-21 01:27:23 Using wallet wallet.dat
2017-06-21 01:27:23 init message: Verifying wallet...
2017-06-21 01:27:23 CDBEnv::Open: LogDir=E:\Bitcoin\Data\database ErrorFile=E:\Bitcoin\Data\db.log
2017-06-21 01:27:23 scheduler thread start
2017-06-21 01:27:23 Bound to [::]:8333
2017-06-21 01:27:23 Bound to 0.0.0.0:8333
2017-06-21 01:27:23 Cache configuration:
2017-06-21 01:27:23 * Using 2.0MiB for block index database
2017-06-21 01:27:23 * Using 8.0MiB for chain state database
2017-06-21 01:27:23 * Using 4086.0MiB for in-memory UTXO set (plus up to 286.1MiB of unused mempool space)
2017-06-21 01:27:23 init message: Loading block index...
2017-06-21 01:27:23 Opening LevelDB in E:\Bitcoin\Data\blocks\index
2017-06-21 01:27:23 Opened LevelDB successfully
2017-06-21 01:27:23 Using obfuscation key for E:\Bitcoin\Data\blocks\index: 0000000000000000
2017-06-21 01:27:23 Opening LevelDB in E:\Bitcoin\Data\chainstate
2017-06-21 01:28:16 Opened LevelDB successfully
2017-06-21 01:28:16 Using obfuscation key for E:\Bitcoin\Data\chainstate: abad9e8260a8bd97
2017-06-21 01:28:25 LoadBlockIndexDB: last block file = 511
2017-06-21 01:28:25 LoadBlockIndexDB: last block file info: CBlockFileInfo(blocks=130, size=123512829, heights=409935...410743, time=2016-05-02...2016-05-08)
2017-06-21 01:28:25 Checking all blk files are present...
2017-06-21 01:28:25 LoadBlockIndexDB: transaction index disabled
2017-06-21 01:28:25 LoadBlockIndexDB: hashBestChain=00000000000000000326a125b9bb55f5c6c4b46cdf7e354a9d42a0eaaa65a932 height=410743 date=2016-05-08 02:32:02 progress=0.551990
2017-06-21 01:28:25 init message: Verifying blocks...
2017-06-21 01:28:25 Verifying last 6 blocks at level 3
2017-06-21 01:28:25 [0%]...[16%]...[33%]...[50%]...[66%]...[83%]...[99%]...[DONE].
2017-06-21 01:28:39 No coin database inconsistencies in last 7 blocks (13602 transactions)
2017-06-21 01:28:39  block index           76109ms
2017-06-21 01:28:39 init message: Loading wallet...
2017-06-21 01:28:39 nFileVersion = 140200
2017-06-21 01:28:39 Keys: 0 plaintext, 212 encrypted, 212 w/ metadata, 212 total
2017-06-21 01:28:39  wallet                   88ms
2017-06-21 01:28:39 setKeyPool.size() = 100
2017-06-21 01:28:39 mapWallet.size() = 38
2017-06-21 01:28:39 mapAddressBook.size() = 12
2017-06-21 01:28:39 mapBlockIndex.size() = 410744
2017-06-21 01:28:39 nBestHeight = 410743
2017-06-21 01:28:39 Reindexing block file blk00000.dat...
2017-06-21 01:28:39 torcontrol thread start
2017-06-21 01:28:39 AddLocal([2001:4643:6fb3:0:7d3c:cf1f:e389:653c]:8333,1)
2017-06-21 01:28:39 Discover: X - 2001:4643:6fb3:0:7d3c:cf1f:e389:653c
2017-06-21 01:28:39 AddLocal([2001:4643:6fb3:0:9dab:e340:cf62:c3ca]:8333,1)
2017-06-21 01:28:39 Discover: X - 2001:4643:6fb3:0:9dab:e340:cf62:c3ca
2017-06-21 01:28:39 AddLocal([2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:8333,1)
2017-06-21 01:28:39 Discover: X - 2001:0:9d38:90d7:1817:1e4f:af2b:51ee
2017-06-21 01:28:39 init message: Loading addresses...
2017-06-21 01:28:40 Loaded 63358 addresses from peers.dat  418ms
2017-06-21 01:28:40 init message: Loading banlist...
2017-06-21 01:28:40 init message: Starting network threads...
2017-06-21 01:28:40 net thread start
2017-06-21 01:28:40 dnsseed thread start
2017-06-21 01:28:40 opencon thread start
2017-06-21 01:28:40 addcon thread start
2017-06-21 01:28:40 init message: Done loading
2017-06-21 01:28:40 msghand thread start
2017-06-21 01:28:40 GUI: Platform customization: "windows"
2017-06-21 01:28:40 GUI: PaymentServer::LoadRootCAs: Loaded  57  root certificates
2017-06-21 01:28:45 Reindexing block file blk00001.dat...
2017-06-21 01:28:49 Reindexing block file blk00002.dat...
2017-06-21 01:28:51 Loading addresses from DNS seeds (could take a while)
2017-06-21 01:28:54 Reindexing block file blk00003.dat...
2017-06-21 01:28:58 receive version message: /Satoshi:0.14.1/: version 70015, blocks=472193, us=80.212.174.17:57875, peer=1
2017-06-21 01:28:59 Reindexing block file blk00004.dat...
2017-06-21 01:29:00 receive version message: /Satoshi:0.14.1/: version 70015, blocks=472193, us=80.212.174.17:57876, peer=2
2017-06-21 01:29:00 receive version message: /Satoshi:0.14.1/: version 70015, blocks=472193, us=80.212.174.17:57877, peer=3
2017-06-21 01:29:00 receive version message: /Satoshi:0.14.1/UASF-Segwit:0.3(BIP148)/: version 70015, blocks=472193, us=80.212.174.17:57873, peer=0
2017-06-21 01:29:03 Reindexing block file blk00005.dat...
2017-06-21 01:29:06 160 addresses found from DNS seeds
2017-06-21 01:29:06 dnsseed thread exit
2017-06-21 01:29:07 Reindexing block file blk00006.dat...
2017-06-21 01:29:11 Reindexing block file blk00007.dat...
2017-06-21 01:29:14 receive version message: /Satoshi:0.14.0/: version 70015, blocks=472193, us=[2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:60243, peer=4
2017-06-21 01:29:15 Reindexing block file blk00008.dat...
2017-06-21 01:29:20 Reindexing block file blk00009.dat...
2017-06-21 01:29:20 receive version message: /Satoshi:0.14.1(UASF-SegWit-BIP148)/: version 70015, blocks=472193, us=80.212.174.17:60246, peer=5
2017-06-21 01:29:21 receive version message: /Satoshi:0.13.1/: version 70014, blocks=472193, us=80.212.174.17:60247, peer=6
2017-06-21 01:29:25 Reindexing block file blk00010.dat...
2017-06-21 01:29:29 Reindexing block file blk00011.dat...
2017-06-21 01:29:33 Reindexing block file blk00012.dat...
2017-06-21 01:29:37 Reindexing block file blk00013.dat...
2017-06-21 01:29:42 Reindexing block file blk00014.dat...
2017-06-21 01:29:46 Reindexing block file blk00015.dat...
2017-06-21 01:29:49 receive version message: /Satoshi:0.14.1(We also need 2MB blocks)/UASF-Segwit:0.3(BIP148)/: version 70015, blocks=472193, us=80.212.174.17:60260, peer=7
2017-06-21 01:29:50 receive version message: /Satoshi:0.14.1/: version 70015, blocks=472193, us=80.212.174.17:60261, peer=8
2017-06-21 01:29:50 Reindexing block file blk00016.dat...
2017-06-21 01:29:54 Reindexing block file blk00017.dat...
2017-06-21 01:29:59 Reindexing block file blk00018.dat...
2017-06-21 01:30:04 Reindexing block file blk00019.dat...
2017-06-21 01:30:08 Reindexing block file blk00020.dat...
2017-06-21 01:30:13 Reindexing block file blk00021.dat...
2017-06-21 01:30:18 Reindexing block file blk00022.dat...
2017-06-21 01:30:21 receive version message: /Satoshi:0.14.1/: version 70015, blocks=472193, us=[2001:4643:6fb3:0:9dab:e340:cf62:c3ca]:60264, peer=9
2017-06-21 01:30:22 Reindexing block file blk00023.dat...
2017-06-21 01:30:26 Reindexing block file blk00024.dat...
2017-06-21 01:30:31 Reindexing block file blk00025.dat...
2017-06-21 01:30:36 Reindexing block file blk00026.dat...
2017-06-21 01:30:40 Reindexing block file blk00027.dat...
2017-06-21 01:30:43 tor: Thread interrupt
2017-06-21 01:30:43 opencon thread exit
2017-06-21 01:30:43 torcontrol thread exit
2017-06-21 01:30:43 addcon thread exit
2017-06-21 01:30:43 scheduler thread interrupt
2017-06-21 01:30:43 Shutdown: In progress...
2017-06-21 01:30:43 net thread exit
2017-06-21 01:30:43 msghand thread exit
2017-06-21 01:30:43 Shutdown: done
2017-06-21 01:39:39 



















2017-06-21 01:39:39 Bitcoin version v0.14.2
2017-06-21 01:39:39 InitParameterInteraction: parameter interaction: -whitelistforcerelay=1 -> setting -whitelistrelay=1
2017-06-21 01:39:39 Assuming ancestors of block 00000000000000000013176bf8d7dfeab4e1db31dc93bc311b436e82ab226b90 have valid signatures.
2017-06-21 01:39:39 GUI: "registerShutdownBlockReason: Successfully registered: Bitcoin Core didn't yet exit safely..."
2017-06-21 01:39:39 Default data directory C:\Users\X\AppData\Roaming\Bitcoin
2017-06-21 01:39:39 Using data directory E:\Bitcoin\Data
2017-06-21 01:39:39 Using config file E:\Bitcoin\Data\bitcoin.conf
2017-06-21 01:39:39 Using at most 125 automatic connections (2048 file descriptors available)
2017-06-21 01:39:39 Using 32 MiB out of 32 requested for signature cache, able to store 1048576 elements
2017-06-21 01:39:39 Using 4 threads for script verification
2017-06-21 01:39:39 Using BerkeleyDB version Berkeley DB 4.8.30: (April  9, 2010)
2017-06-21 01:39:39 scheduler thread start
2017-06-21 01:39:39 Using wallet wallet.dat
2017-06-21 01:39:39 init message: Verifying wallet...
2017-06-21 01:39:39 CDBEnv::Open: LogDir=E:\Bitcoin\Data\database ErrorFile=E:\Bitcoin\Data\db.log
2017-06-21 01:39:39 Bound to [::]:8333
2017-06-21 01:39:39 Bound to 0.0.0.0:8333
2017-06-21 01:39:39 Cache configuration:
2017-06-21 01:39:39 * Using 2.0MiB for block index database
2017-06-21 01:39:39 * Using 8.0MiB for chain state database
2017-06-21 01:39:39 * Using 4086.0MiB for in-memory UTXO set (plus up to 286.1MiB of unused mempool space)
2017-06-21 01:39:39 init message: Loading block index...
2017-06-21 01:39:39 Opening LevelDB in E:\Bitcoin\Data\blocks\index
2017-06-21 01:39:39 Opened LevelDB successfully
2017-06-21 01:39:39 Using obfuscation key for E:\Bitcoin\Data\blocks\index: 0000000000000000
2017-06-21 01:39:39 Opening LevelDB in E:\Bitcoin\Data\chainstate
2017-06-21 01:39:39 Opened LevelDB successfully
2017-06-21 01:39:39 Using obfuscation key for E:\Bitcoin\Data\chainstate: abad9e8260a8bd97
2017-06-21 01:39:45 LoadBlockIndexDB: last block file = 511
2017-06-21 01:39:45 LoadBlockIndexDB: last block file info: CBlockFileInfo(blocks=130, size=123512829, heights=409935...410743, time=2016-05-02...2016-05-08)
2017-06-21 01:39:45 Checking all blk files are present...
2017-06-21 01:39:45 LoadBlockIndexDB: transaction index disabled
2017-06-21 01:39:46 LoadBlockIndexDB: hashBestChain=00000000000000000326a125b9bb55f5c6c4b46cdf7e354a9d42a0eaaa65a932 height=410743 date=2016-05-08 02:32:02 progress=0.551985
2017-06-21 01:39:46 init message: Verifying blocks...
2017-06-21 01:39:46 Verifying last 6 blocks at level 3
2017-06-21 01:39:46 [0%]...[16%]...[33%]...[50%]...[66%]...[83%]...[99%]...[DONE].
2017-06-21 01:39:48 No coin database inconsistencies in last 7 blocks (13602 transactions)
2017-06-21 01:39:48  block index            8616ms
2017-06-21 01:39:48 init message: Loading wallet...
2017-06-21 01:39:48 nFileVersion = 140200
2017-06-21 01:39:48 Keys: 0 plaintext, 212 encrypted, 212 w/ metadata, 212 total
2017-06-21 01:39:48  wallet                  112ms
2017-06-21 01:39:48 setKeyPool.size() = 100
2017-06-21 01:39:48 mapWallet.size() = 38
2017-06-21 01:39:48 mapAddressBook.size() = 12
2017-06-21 01:39:48 mapBlockIndex.size() = 410744
2017-06-21 01:39:48 nBestHeight = 410743
2017-06-21 01:39:48 Reindexing block file blk00000.dat...
2017-06-21 01:39:48 torcontrol thread start
2017-06-21 01:39:48 AddLocal([2001:4643:6fb3:0:7d3c:cf1f:e389:653c]:8333,1)
2017-06-21 01:39:48 Discover: X - 2001:4643:6fb3:0:7d3c:cf1f:e389:653c
2017-06-21 01:39:48 AddLocal([2001:4643:6fb3:0:9dab:e340:cf62:c3ca]:8333,1)
2017-06-21 01:39:48 Discover: X - 2001:4643:6fb3:0:9dab:e340:cf62:c3ca
2017-06-21 01:39:48 AddLocal([2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:8333,1)
2017-06-21 01:39:48 Discover: X - 2001:0:9d38:90d7:1817:1e4f:af2b:51ee
2017-06-21 01:39:48 init message: Loading addresses...
2017-06-21 01:39:48 Loaded 63508 addresses from peers.dat  369ms
2017-06-21 01:39:48 init message: Loading banlist...
2017-06-21 01:39:48 init message: Starting network threads...
2017-06-21 01:39:48 net thread start
2017-06-21 01:39:48 addcon thread start
2017-06-21 01:39:48 dnsseed thread start
2017-06-21 01:39:48 opencon thread start
2017-06-21 01:39:48 init message: Done loading
2017-06-21 01:39:48 msghand thread start
2017-06-21 01:39:48 GUI: Platform customization: "windows"
2017-06-21 01:39:48 GUI: PaymentServer::LoadRootCAs: Loaded  57  root certificates
2017-06-21 01:39:51 receive version message: /Satoshi:0.13.1/: version 70014, blocks=472193, us=[2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:60375, peer=0
2017-06-21 01:39:52 receive version message: /Satoshi:0.13.2/: version 70015, blocks=472193, us=80.212.174.17:60377, peer=1
2017-06-21 01:39:52 ProcessMessages(version, 102 bytes) FAILED peer=2
2017-06-21 01:39:54 Reindexing block file blk00001.dat...
2017-06-21 01:39:59 Reindexing block file blk00002.dat...
2017-06-21 01:39:59 P2P peers available. Skipped DNS seeding.
2017-06-21 01:39:59 dnsseed thread exit
2017-06-21 01:39:59 receive version message: /Satoshi:0.14.1/: version 70015, blocks=472193, us=80.212.174.17:60384, peer=3
2017-06-21 01:40:00 ProcessMessages(version, 102 bytes) FAILED peer=4
2017-06-21 01:40:01 receive version message: /Satoshi:0.13.2/: version 70015, blocks=472193, us=80.212.174.17:60386, peer=5
2017-06-21 01:40:03 Reindexing block file blk00003.dat...
2017-06-21 01:40:08 Reindexing block file blk00004.dat...
2017-06-21 01:40:12 Reindexing block file blk00005.dat...
2017-06-21 01:40:17 Reindexing block file blk00006.dat...
2017-06-21 01:40:21 Reindexing block file blk00007.dat...
2017-06-21 01:40:24 receive version message: /Satoshi:0.13.2/: version 70015, blocks=472193, us=[2001:0:9d38:90d7:1817:1e4f:af2b:51ee]:60399, peer=6
2017-06-21 01:40:26 Reindexing block file blk00008.dat...
2017-06-21 01:40:30 Reindexing block file blk00009.dat...
2017-06-21 01:40:35 Reindexing block file blk00010.dat...
2017-06-21 01:40:39 Reindexing block file blk00011.dat...
2017-06-21 01:40:43 Reindexing block file blk00012.dat...
2017-06-21 01:40:47 Reindexing block file blk00013.dat...
2017-06-21 01:40:52 Reindexing block file blk00014.dat...
2017-06-21 01:40:52 receive version message: /BitcoinUnlimited:1.0.2(EB16; AD12)/: version 80002, blocks=469131, us=80.212.174.17:60408, peer=7
2017-06-21 01:40:53 receive version message: /Satoshi:0.14.99/: version 70015, blocks=472193, us=80.212.174.17:60409, peer=8
2017-06-21 01:40:56 Reindexing block file blk00015.dat...
2017-06-21 01:41:00 Reindexing block file blk00016.dat...
2017-06-21 01:41:05 receive version message: /Satoshi:0.13.2/: version 70015, blocks=472193, us=80.212.174.17:60413, peer=9
2017-06-21 01:41:05 Reindexing block file blk00017.dat...
2017-06-21 01:41:10 Reindexing block file blk00018.dat...
2017-06-21 01:41:14 Reindexing block file blk00019.dat...
2017-06-21 01:41:19 Reindexing block file blk00020.dat...
2017-06-21 01:41:23 Reindexing block file blk00021.dat...
2017-06-21 01:41:28 Reindexing block file blk00022.dat...
2017-06-21 01:41:32 Reindexing block file blk00023.dat...
2017-06-21 01:41:37 Reindexing block file blk00024.dat...
2017-06-21 01:41:41 Reindexing block file blk00025.dat...
2017-06-21 01:41:46 Reindexing block file blk00026.dat...
2017-06-21 01:41:50 Reindexing block file blk00027.dat...
2017-06-21 01:41:54 Reindexing block file blk00028.dat...
2017-06-21 01:41:59 Reindexing block file blk00029.dat...
2017-06-21 01:42:03 Reindexing block file blk00030.dat...
2017-06-21 01:42:08 Reindexing block file blk00031.dat...
2017-06-21 01:42:13 Reindexing block file blk00032.dat...
2017-06-21 01:42:17 Reindexing block file blk00033.dat...
2017-06-21 01:42:22 Reindexing block file blk00034.dat...
2017-06-21 01:42:27 Reindexing block file blk00035.dat...
2017-06-21 01:42:32 Reindexing block file blk00036.dat...
2017-06-21 01:42:32 tor: Thread interrupt
2017-06-21 01:42:32 addcon thread exit
2017-06-21 01:42:32 torcontrol thread exit
2017-06-21 01:42:32 scheduler thread interrupt
2017-06-21 01:42:32 opencon thread exit
2017-06-21 01:42:32 net thread exit
2017-06-21 01:42:32 msghand thread exit
2017-06-21 01:42:32 Shutdown: In progress...
2017-06-21 01:42:32 Shutdown: done

[sipa]

It should progress much faster through the files that have already been reindexed.