Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

README.md

1. Introduction

HiTIME website

2. License

HiTIME is open source software, released under the 3-clause BSD license.

3. Usage

usage: hitime [-h] [--format FORMAT] [--intensityRatio R] [--rtWidth W]
              [--rtSigma RTSIGMA] [--ppm P] [--mzWidth F] [--mzSigma MZSIGMA]
              [--logFile FILENAME] [--mzDelta D] [--removeLow REMOVELOW]
              [--outDir DIRECTORY] [--noScore] [--minSample MINSAMPLE]
              inputFile outputFile

Filter mass spec data for isotope doublets.

positional arguments:
  inputFile             mass spec input data file
  outputFile            file name to save text data to

optional arguments:
  -h, --help            show this help message and exit
  --format FORMAT       file format used for input mass spec data, options
                        are: mzml; mzdata
  --intensityRatio R    ratio of intensities for a doublet (isotope
                        amount/parent amount)
  --rtWidth W           Retention Time full width at half maximum in number of
                        scans
  --rtSigma RTSIGMA     Boundary for retention time width in standard
                        deviations
  --ppm P               m/z tolerance in parts per million
  --mzWidth F           m/z full width at half maximum in parts per million
  --mzSigma MZSIGMA     Boundary for mz window in standard deviations
  --logFile FILENAME    log progress in FILENAME
  --mzDelta D           m/z difference for doublets
  --removeLow REMOVELOW
                        Remove intensity values below the given signal level
  --outDir DIRECTORY    save output in DIRECTORY, if it does not exist it will
                        be created
  --noScore             process without scoring. Use for data exploration
  --minSample MINSAMPLE
                        minimum number of data points required in each sample
                        region

About

High-resolution Twin-Ion Metabolic Extraction

Resources

License

Releases

No releases published

Languages

You can’t perform that action at this time.