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branch: master

Jul 20, 2013

  1. Damien Leroux

    Merge branch 'master' of github.com:bl0b/scriptsforb

    authored
  2. Damien Leroux

    New script for B's needs.

    authored

Nov 08, 2012

  1. Damien Leroux

    Modified stripper's behaviour.

    authored
  2. Damien Leroux

    Fixed st00pid bug where '\n' weren't removed in alignment and seq lines.

    authored

Oct 26, 2012

  1. Damien Leroux

    Modified Exonerate to iterate over all 4 seqs with predicates. Added …

    …option in convert_exonerate_to_fasta to strip hash signs in alignment from target sequences.
    authored

Aug 06, 2012

  1. Damien Leroux

    New script (alpha).

    authored
  2. Damien Leroux

    Removed debug messages. Fixed metadata (strip).

    authored
  3. Damien Leroux

    Modified to take any iterable.

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  4. Damien Leroux

    Now parsing the alignment output (alpha).

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Aug 01, 2012

  1. Damien Leroux

    Added BLAT in blast commands list.

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Jul 31, 2012

  1. Damien Leroux

    Fixed blast to take all commands into account. Fixed split_blast_resu…

    …lts to replace / in output filenames.
    authored

Jun 10, 2012

  1. Damien Leroux

    Modified parse_gff3 to allow absence of structuring comments and to

    improve compatibility with parse_gff2.
    Modifications required the update of three scripts.
    authored

Jun 05, 2012

  1. Damien Leroux

    Added script to convert newlines between unix mac and windows.

    authored

May 22, 2012

  1. Damien Leroux

    new script.

    authored
  2. Damien Leroux

    fixed broken parsing of that stupid unformatted last field.

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  3. Damien Leroux

    debug.

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Apr 15, 2012

  1. Damien Leroux

    Added multiple columns and values per predicate.

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  2. Damien Leroux

    Fixed unfinished statement which broke the output.

    authored
  3. Damien Leroux

    Added query syntax in usage.

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  4. Damien Leroux

    3 fixes.

    Made case-insensitive.
    Added command-line usage and options.
    Added sub-expression grouping.
    authored
  5. Damien Leroux

    Started stupid documentation effort.

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  6. Damien Leroux

    Added csv search tool.

    authored

Mar 18, 2012

  1. Damien Leroux

    Underscored the fasta headers.

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  2. Damien Leroux

    Fixed stOOpid bug in main loop.

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  3. Damien Leroux

    Fixed regexp problems after the violent reformatting.

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  4. Damien Leroux

    Reformatted script. Added support for html format.

    authored
  5. Damien Leroux

    Added script to batch queries to primer3 from a multifasta file.

    authored
  6. Damien Leroux

    Modified script to be also a module.

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  7. Damien Leroux

    Removed debug output

    authored

Mar 14, 2012

  1. Damien Leroux

    Adding script for B. Only modules yet.

    authored
  2. Damien Leroux

    Reformatted code. Added missing output redirection.

    authored

Mar 10, 2012

  1. Damien Leroux

    Added script to split outputs from augustus.

    authored

Mar 09, 2012

  1. Damien Leroux

    Fixed csv parser. Added transposition script.

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Mar 01, 2012

  1. Damien Leroux

    New script.

    authored

Feb 28, 2012

  1. Damien Leroux

    Added extremely specialized script to address B's current needs.

    authored
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