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Feb 28, 2012

  1. Damien Leroux

    Added a very small gff3 parser.

    authored February 29, 2012

Feb 16, 2012

  1. Damien Leroux

    Added simple renaming loop.

    authored February 17, 2012

Feb 06, 2012

  1. Damien Leroux

    New script: extract query from fasta file.

    authored February 06, 2012
  2. Damien Leroux

    Made script executable.

    authored February 06, 2012
  3. Damien Leroux

    Added some kind of fasta abstraction to handle list of sequences.

    authored February 06, 2012

Jan 26, 2012

  1. Damien Leroux

    Fixed ypo.

    authored January 26, 2012

Nov 28, 2011

  1. Damien Leroux

    New ad-hoc script.

    authored November 28, 2011

Oct 28, 2011

  1. Damien Leroux

    Added header format string option. Switched -f and -F for consistency.

    authored October 28, 2011

Oct 27, 2011

  1. Damien Leroux

    Fixed crash when providing no argument at all.

    authored October 27, 2011
  2. Damien Leroux

    Supports reformatting of output. Added usage.

    - sub-list of fields for rows
    - format string for rows
    - with or without headers
    authored October 27, 2011

Oct 26, 2011

  1. Damien Leroux

    Fixed header recognition for BLAT results.

    authored October 26, 2011
  2. Damien Leroux

    new BLAST parser and splitter.

    New routine to parse full BLAST result files. New script to split BLAST
    files containing many query results into many files each contaning one
    query result.
    authored October 26, 2011

Sep 29, 2011

  1. Damien Leroux

    Fixed a stupid typo.

    (added [] around single value passed to set initialization).
    authored September 29, 2011
  2. Damien Leroux

    Include the line with prefix in the group of lines sharing the prefix.

    authored September 29, 2011

Sep 26, 2011

  1. Damien Leroux

    New script.

    authored September 27, 2011

Sep 15, 2011

  1. Damien Leroux

    Added -q,--quiet option. Now detects short rows.

    authored September 16, 2011

Sep 12, 2011

  1. Damien Leroux

    Added test to not shrink short headers (headerlen <= slen+elen)

    authored September 12, 2011
  2. Damien Leroux

    New script takes a fasta files and shortens the long header lines.

    authored September 12, 2011

Sep 03, 2011

  1. Damien Leroux

    Added --uniq,-u option to output only set([cross-referenced payloads]).

    Added special output filename 'stdout'.
    authored September 04, 2011
  2. Damien Leroux

    Fixed bogus newline&indent in csv output

    authored September 04, 2011

Aug 15, 2011

  1. Damien Leroux

    New scripts.

    Csv parser (featuring make_index(columns_key, columns_payload, blacklist_set))
    Basic cross-referencer.
    authored August 15, 2011

May 08, 2011

  1. Damien Leroux

    Modified fasta output to b's taste, until further change.

    authored May 09, 2011
  2. Damien Leroux

    Seems to work OK now.

    authored May 09, 2011
  3. Damien Leroux

    An experiment to ease querying the primer3 site.

    authored May 09, 2011
  4. Damien Leroux

    Fixed newlines for mac and uppercase sequence recognition.

    authored May 09, 2011
  5. Damien Leroux

    Added primer3tofasta, another simple extractor from blast searches.

    Moved helper read_blast into blast_parser.py.
    authored May 08, 2011

May 02, 2011

  1. Damien Leroux

    hello, commit world.

    authored May 02, 2011
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