@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

Pinned repositories

  1. nextflu

    Real-time tracking of influenza evolution

    JavaScript 70 21

  2. blotter

    bedford lab research

    HTML 22 43

  3. global-migration

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 12 1

  4. baltic

    Forked from evogytis/baltic

    BALTIC - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation

    Jupyter Notebook 10 3

  5. siv-cst

    Dynamics of cross-species transmission in SIV

    Jupyter Notebook 2 1

  6. zika-seq

    Pipelines to do MinION sequencing of Zika virus

    Python 11 1

  • Investigating dengue virus antigenic evolution. Supplements work from:

    Jupyter Notebook 2 Updated Sep 25, 2018
  • bedford lab research

    HTML 22 43 Updated Sep 22, 2018
  • Real-time tracking of influenza evolution

    JavaScript 70 21 AGPL-3.0 Updated Sep 15, 2018
  • Jupyter Notebook Updated Sep 12, 2018
  • Genetic analysis of the Zika epidemic in Colombia

    Jupyter Notebook Updated Sep 10, 2018
  • Looking into MERS-CoV dynamics through the structured coalescent lens

    Jupyter Notebook 3 3 CC-BY-SA-4.0 Updated Aug 25, 2018
  • Pipelines to do MinION sequencing of Zika virus

    Python 11 1 Updated Aug 20, 2018
  • Jupyter Notebook Updated Aug 15, 2018
  • Evolutionary analysis of USVI Zika epidemic

    Mathematica 1 Updated Aug 10, 2018
  • Evolutionary and epidemiological analysis of Roka HIV outbreak

    Jupyter Notebook 1 2 Updated Aug 8, 2018
  • Imputing sampling dates from sample IDs and sequences

    Mathematica 1 2 Updated Aug 7, 2018
  • Recommendations and best practices for the Bedford Lab.

    Updated Jul 17, 2018
  • Deploy hook for blotter web app

    Ruby Updated Jul 3, 2018
  • BALTIC - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation

    Jupyter Notebook 10 7 Updated Jun 11, 2018
  • Protocols for sequencing mumps viruses

    1 1 Updated Apr 9, 2018
  • Speedy Wavenet generation using dynamic programming ⚡️

    Jupyter Notebook 231 GPL-3.0 Updated Mar 14, 2018
  • Git demo

    Updated Sep 29, 2017
  • Estimating unsampled viral diversity

    Jupyter Notebook 1 Updated Aug 23, 2017
  • Script to build and deploy Bedford lab website

    Ruby Updated Jul 25, 2017
  • Dynamics of cross-species transmission in SIV

    Jupyter Notebook 2 1 Updated Jun 16, 2017
  • mitii

    Forked from trvrb/sismid

    Pathogen evolution, selection and immunity

    HTML 19 Updated May 24, 2017
  • The Zika bioinformatics pipeline

    Python 6 Updated Mar 24, 2017
  • Evolutionary dynamics of yellow fever virus

    Python 1 Updated Nov 17, 2016
  • chikv

    Forked from natbo77/chikv

    Evolutionary dynamics of chikungunya virus

    Jupyter Notebook 1 Updated Sep 2, 2016
  • Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 12 1 Updated Jul 2, 2016
  • Analysis of stabilizing and destabilizing mutations in influenza evolution

    JavaScript 4 AGPL-3.0 Updated May 3, 2016
  • Model of cross-reactive antibody response from B cells after infection or vaccination

    Jupyter Notebook GPL-2.0 Updated Jan 13, 2016
  • Detailed antigenic dynamics of influenza virus revealed by Bayesian phylogenetic clustering

    PostScript 6 1 Updated Dec 31, 2015