Permalink
Browse files

Update README with curonia.

  • Loading branch information...
evogytis committed Dec 7, 2017
1 parent 31f66f8 commit e051135f7d3c103a7a85fb98bf4b75be7d46981d
Showing with 7 additions and 0 deletions.
  1. +7 −0 README.md
View
@@ -87,6 +87,13 @@ for k in myTree.Objects:
[`galindia.ipynb`](galindia.ipynb) is a work in progress that uses baltic to plot JSONs from [nextstrain.org](nextstrain.org) in order to allow customisable, static, publication-ready figures for phylogenies coming from nextstrain's augur pipeline.
--------------------
## curonia
<img src="figures/coa_curonia.jpg" width=200px>
[`curonia.ipynb`](curonia.ipynb) generalises the [notebook](https://github.com/ebov/space-time/blob/master/Scripts/notebooks/EBOV_phylogeography_animation.ipynb) used to animate the [spread of Ebola virus in West Africa](https://www.youtube.com/watch?v=j4Ut4krp8GQ). This notebook should require minimal manual editing to produce similarly styled animation of other study systems.
--------------------
## baltic was used in the following publications:
- Dudas G, Carvalho L, Rambaut A, Bedford T. _MERS-CoV spillover at the camel-human interface_, 2017. __bioRxiv__ 173211; doi: https://doi.org/10.1101/173211.

0 comments on commit e051135

Please sign in to comment.