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Commits on Oct 4, 2018
Commits on Jun 11, 2018
  1. Minor bug fixes, add papers.

    evogytis committed Jun 11, 2018
Commits on Jan 22, 2018
Commits on Dec 7, 2017
  1. Fix readme.

    evogytis committed Dec 7, 2017
  2. Update README with curonia.

    evogytis committed Dec 7, 2017
Commits on Sep 28, 2017
  1. Adjust CoA sizes.

    evogytis committed Sep 28, 2017
  2. Fix CoA.

    evogytis committed Sep 28, 2017
Commits on Sep 26, 2017
Commits on Jun 16, 2017
  1. Revert "Merge branch 'master' into master"

    evogytis committed Jun 16, 2017
    This reverts commit 2afc86a.
  2. Update publications.

    evogytis committed Jun 16, 2017
  3. Reduced and unrooted trees.

    evogytis committed Jun 16, 2017
    Introduce unrooted tree layout (with code stolen from nextstrain.org) and reduced trees (resulting from tracing the history of a subset of tips). Can now output tree strings with NEXUS bits required for FigTree to parse annotations correctly.
Commits on May 1, 2017
  1. Update Ebola reference.

    evogytis committed May 1, 2017
Commits on Mar 8, 2017
  1. De-capitalise name.

    evogytis committed Mar 8, 2017
  2. Add redirect.

    evogytis committed Mar 8, 2017
Commits on Mar 6, 2017
  1. Format references.

    evogytis committed Mar 6, 2017
Commits on Mar 5, 2017
  1. Add list of publications.

    evogytis committed Mar 5, 2017
Commits on Mar 2, 2017
  1. Fixes to subtree function.

    evogytis committed Mar 2, 2017
Commits on Feb 26, 2017
  1. Update to baltic and austechia.

    evogytis committed Feb 26, 2017
    baltic now supports collapsing and extracting subtrees.
    
    austechia now has a cell showing how to integrate clade frequency
    calculations with baltic.
Commits on Jan 12, 2017
  1. Update samogitia.py

    evogytis committed Jan 12, 2017
  2. Merge pull request #3 from jameshadfield/master

    evogytis committed Jan 12, 2017
    fixed broken links
Commits on Oct 26, 2016
  1. Update baltic.

    evogytis committed Oct 26, 2016
    baltic improvements:
    - Functions to identify common ancestors
    - Improved function to recover tree string
    - Improved function to collapse nodes (horizontally)
    - Parsing FigTree comments (not fully tested)
    - Collapsing clades vertically (early stages)
    
    austechia improvements:
    - Adjusted cell to show node collapse (horitonztally) with anonymous
    functions
    - Added cell to show code for returning tree strings
    - Added cell to show code for plotting multitype tree
    - Added cell to show code for collapsing clades (vertically)
Commits on Sep 23, 2016
  1. Update baltic.

    evogytis committed Sep 23, 2016
Commits on Sep 14, 2016
  1. Update baltic and samogitia.

    evogytis committed Sep 14, 2016
    - Add support for multi type trees
    - Add leaf and node lists to tree class
    
    - Add code to samogitia to analyse exploded trees
Commits on Aug 5, 2016
Commits on Jul 22, 2016
  1. fix pretentious read

    evogytis committed Jul 22, 2016
  2. Merge pull request #1 from blab/readme

    evogytis committed Jul 22, 2016
    Include readme
Commits on Jun 23, 2016
  1. Update with radial trees.

    evogytis committed Jun 23, 2016