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Coarse grid

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sidneymbell
sidneymbell committed Mar 31, 2019
1 parent f0be978 commit 837ea3654c3fd743a4c6998f5aade217625920a2
Showing with 6 additions and 6 deletions.
  1. +3 −3 fitness_model/antigenic_fitness.py
  2. +3 −3 fitness_model/helper_scripts/sbatch_param_wrapper.py
@@ -596,9 +596,9 @@ def plot_trajectory_multiples(af, starting_timepoints=None, n_clades_per_plot=4)

elif args.mode == 'fit':

d1_vals = np.linspace(0.55,1.45,7)
d2_vals = np.linspace(0.55,1.45,7)
d3_vals = np.linspace(0.1,1.,7)
d1_vals = np.linspace(0.,6.,7)
d2_vals = np.linspace(0.,6.,7)
d3_vals = np.linspace(0.,6.,7)

output = []
for (d1,d2,d3) in product(d1_vals, d2_vals, d3_vals):
@@ -14,9 +14,9 @@
if not os.path.isdir(out_path):
os.mkdir(out_path)

beta_vals = np.linspace(0.1, 1.0,7)
gamma_vals = np.linspace(0.1,1.0,7)
sigma_vals = np.linspace(2.05,2.95,7)
beta_vals = np.linspace(0., 3., 7)
gamma_vals = np.linspace(0., 3., 7)
sigma_vals = np.linspace(0., 3., 7)

for (b,g,s) in product(beta_vals, gamma_vals, sigma_vals):
name = ''.join(random.choice('0123456789abcdef') for n in xrange(30))

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