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Fine grid for sim

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sidneymbell
sidneymbell committed Apr 1, 2019
1 parent 7458684 commit f6f61a58f369abaf7d56899c7616e59976919823
@@ -596,9 +596,9 @@ def plot_trajectory_multiples(af, starting_timepoints=None, n_clades_per_plot=4)

elif args.mode == 'fit':

d1_vals = np.linspace(0.,6.,7)
d2_vals = np.linspace(0.,6.,7)
d3_vals = np.linspace(0.,6.,7)
d1_vals = np.linspace(0.55,1.45,7)
d2_vals = np.linspace(0.55,1.45,7)
d3_vals = np.linspace(0.55,1.45,7)

output = []
for (d1,d2,d3) in product(d1_vals, d2_vals, d3_vals):
@@ -11,9 +11,9 @@
if not os.path.isdir(out_path):
os.mkdir(out_path)

beta_vals = np.linspace(0.0,3.,7)
gamma_vals = np.linspace(0.0,3.,7)
sigma_vals = np.linspace(0.,3.,7)
beta_vals = np.linspace(3.,3.9,7)
gamma_vals = np.linspace(0.05,0.95,7)
sigma_vals = np.linspace(0.05,0.95,7)

for (b,g,s) in product(beta_vals, gamma_vals, sigma_vals):
name = ''.join(random.choice('0123456789abcdef') for n in xrange(30))

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