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Include auspice directory

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trvrb committed Sep 28, 2019
1 parent c570008 commit 4a37a54625da6537fde00ee425f5692b49ad627f
@@ -14,6 +14,7 @@ Avian influenza viruses (AIVs) periodically cross species barriers and infect hu

## Project structure

* [`auspice/`](auspice/): contains JSON trees viewable via Nextstrain
* [`data/`](data/): contains consensus genomes, within-host SNV calls and phylogenies
* [`scripts`](scripts/): contains processing scripts
* [`figures/`](figures/): contains Jupyter notebooks to generate manuscript figures
* [`scripts`](scripts/): contains processing scripts
@@ -0,0 +1,12 @@
# Auspice trees

These tree JSONs are auspice compatible and are viewable via Nextstrain from the following links:

* https://nextstrain.org/community/blab/h5n1-cambodia/ha
* https://nextstrain.org/community/blab/h5n1-cambodia/na
* https://nextstrain.org/community/blab/h5n1-cambodia/pb1
* https://nextstrain.org/community/blab/h5n1-cambodia/pb2
* https://nextstrain.org/community/blab/h5n1-cambodia/pa
* https://nextstrain.org/community/blab/h5n1-cambodia/mp
* https://nextstrain.org/community/blab/h5n1-cambodia/np
* https://nextstrain.org/community/blab/h5n1-cambodia/ns

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