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clean up and expand gitignore
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Just wanted to group things so it's a little more clear what chunks of  the gitignore relate to what types of files. I also added to the gitignore to stop tracking snakemake log files and metadata.
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alliblk committed Sep 1, 2019
1 parent 3a607d0 commit 541f89c
Showing 1 changed file with 12 additions and 10 deletions.
22 changes: 12 additions & 10 deletions .gitignore
@@ -1,22 +1,22 @@

scripts/\.ipynb_checkpoints/

data/all_included_accessions\.xls

data/colombia-seqs-only-strippedtoref-aligned\.fasta
data/all_included_accessions\.csv

# Snakemake logs #
\.snakemake/metadata/

\.snakemake/log/

data/colombia-seqs-only-strippedtoref-aligned\.fasta

manuscript/

supplemental-analysis/rarefaction-curves/colombia/.snakemake/metadata/
supplemental-analysis/rarefaction-curves/mexico/.snakemake/metadata/
supplemental-analysis/rarefaction-curves/mexico/mex-replicate-*/.snakemake/metadata/
supplemental-analysis/rarefaction-curves/colombia/col-replicate-*/.snakemake/metadata/
supplemental-analysis/\.snakemake/metadata/

supplemental-analysis/rarefaction-curves/*/*/results/
supplemental-analysis/\.snakemake/log/


# Jupyter notebook annoyingness #
scripts/\.ipynb_checkpoints/
*.ipynb_checkpoints
.dropbox
.DS_Store
Expand All @@ -41,4 +41,6 @@ Icon?
*.out
*.pdfsync

# Manuscript (for now) #
manuscript/
2018-10-23-zika-colombia-manuscript\.md

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