Join GitHub today
GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together.Sign up
Clone this wiki locally
see Installation page
Quick Run page
and the more detailed Run Options page
For information on the theory behind these methods please see
- Smith, SA, and BC O'Meara. 2012. Divergence time estimation using penalized likelihood for large phylogenies. Bioinformatics 28 (20): 2689-2690.
- Sanderson, MJ. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol. 19 (1): 101-109.