Stephen Smith edited this page Mar 3, 2017 · 15 revisions
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see Installation page

Quick Run page

and the more detailed Run Options page

For information on the theory behind these methods please see

  • Smith, SA, and BC O'Meara. 2012. Divergence time estimation using penalized likelihood for large phylogenies. Bioinformatics 28 (20): 2689-2690.


  • Sanderson, MJ. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol. 19 (1): 101-109.