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Makefile
README.md
model_define.h
model_routine_agent.cpp
model_routine_config.cpp
model_routine_grid.cpp
model_routine_mech_intrct.cpp
model_routine_output.cpp
pcc_qwang.nv
pcc_qwang.st
pcc_qwang.tt
pcc_qwang.varf
pcc_qwang_cells.txt
pcc_qwang_phi0.12.st
pcc_qwang_phi0.12.txt
readme.txt
run_param.xml

README.md

multicell_boolean_networks

The model requires 5 parameters as before. To setup two BNs, one has to write the two nv vectors in a single file(.nv). Each BN will occupy a line. Similarly the varf of each BN should be placed one after another in a single file (.varf)

Memory is allocated to pass information to all mpi processes

  1. Memory for all Voxels
  2. Memory for all Cells positions, radius, and type
  3. Memory for initial Boolean states of cells, This is variable
  4. Memory for definition of N Boolean network each Boolean network needs the following space
    • 3 spaces of S32 for num_nodes, num_varf_rows, num_tt_rows.
    • a block of num_nodesnum_varf_rowssizeof(S32)
    • a block of num_nodesnum_tt_rowssizeof(S32)
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