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Parses ISA-Tab investigation file and dependent files into one big hash-based Perl data structure
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Bio-Parser-ISATab This module makes a gallant attempt to read ISA-Tab files for an investigation into one deep hash-based data structure. It is read-only at the moment, and the best usage information can be found in the test scripts t/01-invest.t t/02-study.t t/03-assay.t It's in a very basic state at the moment. Contributions, testing and general comments are welcome. Limitations are listed in the main documentation 'perldoc Bio::Parser::ISATab'. To get a good idea of the hash structure, see the test scripts for how to load in an ISA-Tab directory - create a VERY small (one or two sample) ISA-Tab file, load it and do: use Data::Dumper; print Dumper($isa); LINKS ISA-Tab: http://isatab.sourceforge.net/specifications.html Source: http://github.com/bobular/Bio-Parser-ISATab INSTALLATION To install this module, run the following commands: perl Build.PL ./Build ./Build test ./Build install SUPPORT AND DOCUMENTATION After installing, you can find documentation for this module with the perldoc command. perldoc Bio::Parser::ISATab You can also look for information at: RT, CPAN's request tracker http://rt.cpan.org/NoAuth/Bugs.html?Dist=Bio-Parser-ISATab AnnoCPAN, Annotated CPAN documentation http://annocpan.org/dist/Bio-Parser-ISATab CPAN Ratings http://cpanratings.perl.org/d/Bio-Parser-ISATab Search CPAN http://search.cpan.org/dist/Bio-Parser-ISATab/ LICENSE AND COPYRIGHT Copyright (C) 2011 Bob MacCallum This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License. See http://dev.perl.org/licenses/ for more information.