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AMD wrappers for Paul Stothard's Sequence Manipulation Site's (sms2) alignment features for use with RequireJS.
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LICENSE
README.md
align_pair_linear.js
align_pair_quad.js
blosum62.js
example.js
identity.js
pairwise_align.js
score_set.js

README.md

sms2-amd

An AMD module containing the sequence alignment functionality from Sequence Manipulation Suite by Paul Stothard (University of Alberta, Canada).

Usage

See pairwise_align.js for an example alignment function that uses AlignPairLinear.

pairwise = require('path/to/pairwise_align');
alignment = pairwise.align("AGTACGTAC","GTAC")
console.log(alignment.getAlignedM())
console.log(alignment.getAlignedN())
console.log(alignment.score)

License

Please see the original sms2 LICENSE file.

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