A book for teaching people how to do comparative methods in R
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_book
images
00_firststeps.Rmd
20_gettingdata.Rmd
30_visualizingdata.Rmd
40_dullmodels.Rmd
50_testingmodels.Rmd
51_testingmethods.Rmd
60_Continuous.Rmd
70_Correlations.Rmd
80_Discrete.Rmd
90_Diversification.Rmd
91_SSE.Rmd
94_RAxML.Rmd
95_GeneTreeSpeciesTree.Rmd
96_Dating.Rmd
98__VisualizingTreesAndData.Rmd
99_references.Rmd
BrownianMotionAndCentralLimitTheorem.R
ComparativeMethodsInR.Rproj
ContinuousTrait_Answers.R
ContinuousTrait_NoAnswers.R
DiscreteTrait_Answers.R
DiscreteTrait_NoAnswers.R
IntroToR_NoAnswers.R
LICENSE
LikelihoodBayes_Answers.R
LikelihoodBayes_NoAnswers.R
README.md
RenderAll.R
_bookdown.yml
_build.sh
_output.yml
index.Rmd
packages.bib
preamble.tex
style.css
toc.css
zotero.bib

README.md

ComparativeMethodsInR

A book for teaching people how to do comparative methods in R

You will need to

devtools::install_github("rstudio/bookdown")
devtools::install_github("bomeara/phybase")

To render it:

bookdown::render_book("index.Rmd", "bookdown::pdf_book")

Or for an html version,

bookdown::render_book("index.Rmd", "bookdown::gitbook")

And to deploy on bookdown,

bookdown::publish_book(render = "local", account="bomeara")

Or just use the RenderAll.R script.

The book.bib references are exported from Mendeley, from the PhyloMeth group.

use the citr package with the rstudio addin to cite easily