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README.md

phenotypr

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The goal of phenotypr is to predict a phenotype form EHR data using both ICD diagnosis codes and NLP processed notes.

Installation

You can install phenotypr from github with:

# install.packages("devtools")
devtools::install_github("borishejblum/phenotypr")

Reference

This software is partly based on ideas developped in :

Yu, S. et al. Toward high-throughput phenotyping: Unbiased automated feature extraction and selection from knowledge sources. J. Am. Med. Informatics Assoc. 22, 993–1000 (2015).