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ran surfg examples

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commit ca67e0b0a7df7a0f680aad9f61e8b9477a880725 1 parent c4e3f18
bosco authored
Showing with 7,024 additions and 3 deletions.
  1. +1 −0  .gitignore
  2. +7,021 −0 examples/surfg/AE004092/tmhmm.out
  3. +2 −3 examples/surfg/sort.py
1  .gitignore
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@@ -1,2 +1,3 @@
*.pyc
tests/*/*out
+examples/*/*out
7,021 examples/surfg/AE004092/tmhmm.out
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7,021 additions, 0 deletions not shown
5 examples/surfg/sort.py
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@@ -6,7 +6,7 @@
names = """
AE004092 Streptococcus pyogenes
AE017198 Lactobacillus johnsonii
-P000033 Lactobacillus acidophilus
+CP000033 Lactobacillus acidophilus
CP000413 Lactobacillus gasseri
CR954253 Lactobacillus delbrueckii
"""
@@ -19,8 +19,7 @@
if not os.path.isfile(pse):
os.system("python ../../inmembrane.py %s.fasta > %s" % (genome, pse))
- if base in gbk:
- print "%s: %s" % (base, gbk[base])
+ print "%s: %s" % (genome, gbk[genome])
print "--"
category_count = {}
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