Skip to content
No description, website, or topics provided.
Branch: master
Clone or download
Latest commit 5885550 May 28, 2019
Type Name Latest commit message Commit time
Failed to load latest commit information.
GenerateWalkMatrix.R Add files via upload May 28, 2019 Update May 28, 2019
PhenoGeneRankerFunctions.R Add files via upload May 28, 2019 Update May 28, 2019
RunRWR.R Add files via upload May 28, 2019
Utils.R Add files via upload May 28, 2019



What is PhenoGeneRanker?

PhenoGeneRanker is a gene/disease prioritization tool that utilizes heterogeneous gene disease network. PhenoGeneRanker allows multi-layer gene and disease networks. It also calculates empirical p-values of gene ranking using random stratified sampling of genes based on their connectivity degree in the network.


Generates Complete Multiplex Heterogeneous Network (Walk Matrix - WM) using multiple gene/protein layers and phenotype layers.


Takes gene and phenotype seed file as input, and runs the RWR on Complete Multiplex Heterogenous WM and generates ranking results.


Functions are used by GenerateWalkMatrix.R and RunRWR.R


Some utility functions.

You can’t perform that action at this time.