Analysis of the effects of deafening on birdsong and gene expression in birdsong neural circuitry. Companion code for
Colquitt, B. M., Li, K., Green, F., Veline, R. & Brainard, M. S. Neural circuit-wide analysis of gene expression during deafening-induced destabilization of birdsong. eLife 12:e85970 (2023) doi:10.7554/eLife.85970
The repository is divided into three main parts:
- song_analysis -- code to analyze song changes following deafening
- seq_analysis -- code to analyze associated Serial Laser Capture RNA (SLCR)-seq data