From aae0c8679c6f07f033e92a05fa23540f7ae875eb Mon Sep 17 00:00:00 2001
From: Will Graham <32364977+willGraham01@users.noreply.github.com>
Date: Thu, 1 Feb 2024 11:05:51 +0000
Subject: [PATCH 1/2] Create CITATION.cff

---
 CITATION.cff | 60 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 60 insertions(+)
 create mode 100644 CITATION.cff

diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 0000000..a55dcee
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,60 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: brainglobe-segmentation
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - given-names: Adam
+    family-names: Tyson
+    email: hello@brainglobe.info
+    affiliation: 'Sainsbury Wellcome Centre, University College London'
+  - given-names: Horst
+    family-names: Obenhaus
+  - given-names: BrainGlobe
+    family-names: Developers
+    email: hello@brainglobe.info
+repository-code: 'https://github.com/brainglobe/brainglobe-segmentation'
+url: 'https://brainglobe.info'
+abstract: >-
+  Segmentation of anatomical structures in a common
+  coordinate space.
+license: BSD-3-Clause
+date-released: '2024-01-16'
+year: 2024
+preferred-citation:
+  type: article
+  authors:
+  - given-names: Adam
+    family-names: Tyson
+    affiliation: 'Sainsbury Wellcome Centre, University College London'
+  - given-names: Mateo
+    family-names: Velez-Fort
+  - given-names: Charly V.
+    family-names: Rousseau
+  - given-names: Lee
+    family-names: Cossell
+  - given-names: Chryssanthi
+    family-names: Tsitoura
+  - given-names: Stephen C.
+    family-names: Lenzi
+  - given-names: Horst A.
+    family-names: Obenhaus
+  - given-names: Federico
+    family-names: Claudi
+  - given-names: Tiago
+    family-names: Branco
+  - given-names: Troy W.
+    family-names: Margrie
+  doi: "10.1038/s41598-021-04676-9"
+  url: "https://doi.org/10.1038/s41598-021-04676-9"
+  journal: "Scientific Reports"
+  month: 1
+  year: 2022
+  title: "Accurate determination of marker location within whole-brain microscopy images"
+  issue: 1
+  volume: 12
+citation-sentence: "This project makes use of the brainglobe-segmentation plugin for segmentation of objects and regions of the brain."

From 44eb4116c1cff14800a1da1d7e59b9371fc581b4 Mon Sep 17 00:00:00 2001
From: Will Graham <32364977+willGraham01@users.noreply.github.com>
Date: Fri, 9 Feb 2024 15:37:50 +0000
Subject: [PATCH 2/2] Update MANIFEST.in

---
 MANIFEST.in | 1 +
 1 file changed, 1 insertion(+)

diff --git a/MANIFEST.in b/MANIFEST.in
index 0d95878..3d117fc 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,3 +1,4 @@
+include CITATION.cff
 include LICENSE
 include README.md