From b4b7146895af11c318d306e313968c23432700f1 Mon Sep 17 00:00:00 2001 From: IgorTatarnikov Date: Thu, 23 May 2024 13:48:53 +0100 Subject: [PATCH] Removed calls to suppress_tf_logging as cellfinder now uses PyTorch --- brainglobe_workflows/brainmapper/main.py | 5 ----- 1 file changed, 5 deletions(-) diff --git a/brainglobe_workflows/brainmapper/main.py b/brainglobe_workflows/brainmapper/main.py index 22e32cb..66e6ef6 100644 --- a/brainglobe_workflows/brainmapper/main.py +++ b/brainglobe_workflows/brainmapper/main.py @@ -3,9 +3,6 @@ =============== Runs each part of the brainmapper pipeline in turn. - -N.B imports are within functions to prevent tensorflow being imported before -it's warnings are silenced """ import logging @@ -20,7 +17,6 @@ from brainglobe_utils.image.heatmap import heatmap_from_points from brainglobe_utils.IO.cells import get_cells, save_cells from brainglobe_utils.IO.image.load import read_z_stack -from cellfinder.core.main import suppress_tf_logging, tf_suppress_log_messages BRAINREG_PRE_PROCESSING_ARGS = None @@ -44,7 +40,6 @@ def cells_exist(points_file): def main(): - suppress_tf_logging(tf_suppress_log_messages) from brainreg.core.main import main as register from brainglobe_workflows.brainmapper import prep