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Cython eventseg #111
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Cython eventseg #111
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Add the correspondingly compiled |
Jenkins, retest this please. |
Also, simplify pybind11 include dirs usage and remove cython and pybind11 from the install dependencies.
Travis tests fail otherwise.
Travis tests fail otherwise.
@cbaldassano Could you please review this PR? |
cbaldassano
approved these changes
Oct 3, 2016
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Looks good to me, really impressed at how much of a difference this made!
Add NumPy include dirs to setup
mihaic
approved these changes
Oct 3, 2016
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Added cython module for the _log function which speeds up examples/eventseg/simulated_data.py by 2.8X on my machine (Intel(R) Xeon(R) CPU E5-2699 v3 @ 2.30GHz, Python 3.4.3 (default, Jan 26 2016, 02:25:35) [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)] on linux)
time python3 simulated_data.py
Before:
real 0m10.687s
user 0m11.325s
sys 0m6.733s
After:
real 0m3.811s
user 0m4.466s
sys 0m6.722s