Metagenomics Analysis Tools
R Shell Perl
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DESCRIPTION
LICENSE
NAMESPACE
README.md

README.md

Package matR (Metagenomics Analysis Tools) is an analysis client for the MG-RAST metagenome annotation engine, part of the US Department of Energy (DOE) Systems Biology Knowledge Base (KBase). Customized analysis and visualization tools securely access remote data and metadata within the popular open source R language and environment for statistical computing. See: http://metagenomics.anl.gov and: http://kbase.us.

CRAN (Comprehensive R Archive Network) hosts the package including its manual.

LOADING

During an R session, load matR with:

> library(matR)

INSTALLATION

Make sure to have a current version of R, available from http://www.r-project.org. Then during an R session, install with:

> install.packages('matR', dep=TRUE)
> library(matR)
> dependencies()

OLD VERSION

Users of the early release version can reinstall it with:

> remove.packages('matR')        # if necessary
> install.packages('devtools')
> library(devtools)
> install_github(repo='MG-RAST/matR', ref="early-release")
> library(matR)
> dependencies()