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rtd fixes

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commit 29f572f289b94b608b9ddf8787ea942f9b7f7dc8 1 parent 3e14737
@brantp authored
Showing with 6 additions and 6 deletions.
  1. +4 −6 mcl_id_triples_by_blat.py
  2. +2 −0  rtd_run.py
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10 mcl_id_triples_by_blat.py
@@ -7,14 +7,12 @@
'''
-<<<<<<< HEAD
-import os, sys, re, gzip
-=======
-import os, sys, re, numpy
->>>>>>> 9746a9d04d8803a838c0229517a1dacbdb12cb1b
+import os, sys, re, gzip, numpy
+
+
from config import SCRATCH as scratch
-fail_to_local = False #must set to "True" to allow use of working directory for blat output
+fail_to_local = True #must set to "True" to allow use of working directory for blat output
#note that this can result in large .blat files on shared volumes!
keep_blat = False
pct_id_cut = 0.8
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2  rtd_run.py
@@ -42,6 +42,8 @@
import os, sys, re, numpy, gzip
import gdata.spreadsheet.service
+import run_safe
+
def cat(filelist,targetfile):
'''cats an arbitrarily large filelist to targetfile'''
fh = smartopen(targetfile,'w')
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