Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
Browse files

added gdata 2.0.10

  • Loading branch information...
commit 374e9f790afb5d6e03d09708e8b51e85ff6c98d2 1 parent 374f28c
@brantp authored
Showing with 2 additions and 2 deletions.
  1. BIN  gdata-2.0.10.tar.gz
  2. +2 −2 rtd_run.py
View
BIN  gdata-2.0.10.tar.gz
Binary file not shown
View
4 rtd_run.py
@@ -246,8 +246,8 @@ def run_lsf_blat(subjects,queries,blattile,blatargstr='',num_batches=100):
jobids,namedict = LSF.lsf_jobs_submit(cmds,logfile,'normal_serial',bsub_flags='-R "select[mem > 20000]"',jobname_base='blat2mat',num_batches=num_batches)
time.sleep(20)
LSF.lsf_wait_for_jobs(jobids,logfile,namedict=namedict)
-
- cmds = LSF.lsf_no_success_from_log(logfile)
+ logfiles = glob(logfile+'*.lsflog')
+ cmds = reduce(lambda x,y:x+y, [LSF.lsf_no_success_from_log(lf) for lf in logfiles])
if not all([os.path.exists(f) for f in labf]):
raise OSError, 'blat failed'
Please sign in to comment.
Something went wrong with that request. Please try again.