A Practical (And Opinionated) Guide To Analyzing 450K Data
streaming, flexible agglomerative clustering
sequence alignment. global, local, glocal.
Best-practice pipelines for fully automated high throughput sequencing analysis
A columnar data container that can be compressed.
bigwig in go via libbigWig
docker image for bioinformatics
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
BWK awk modified for biological data
biogo is a bioinformatics library for Go
tabix file access with golang using biogo machinery
Resampling residuals of a linear model to determine significance with bootstrap-like sub-sampling
run bowtie then bfast on colorspace reads.
Automatically exported from code.google.com/p/bpbio
Automatically exported from code.google.com/p/bpgeo
python wrapper to submit jobs to bsub (and later qsub)
python wrapper to dpryan79's bigwig library using cffi
align BS-Seq reads and extract methylation without intermediate temp files
Map sequence from Molecular Inversion Probes with BWA, strip arms, de-dup, ..., profit
adjust for cell-type composition in 450K data using houseman's and other methods.
quick-n-dirty tabix in go using cgo
yeah, another tabix wrapper for go.
simple library for dealing with SAM cigar strings