somalier version: 0.2.10 [somalier] starting read of 1672 samples [somalier] time to read files and get per-sample stats for 1672 samples: 2.49 [somalier] time to get expected relatedness from pedigree graph: 0.00 [somalier] html and text output will have unrelated sample-pairs subset to 7.15% of points [somalier] time to calculate all vs all relatedness for all 1396956 combinations: 5.94 [somalier] wrote interactive HTML output for 206922 pairs to: somalier.html [somalier] joining families S13617 and S13619 because of relatedness > 0.2 [somalier] joining families S27778 and S13931 because of relatedness > 0.2 [somalier] joining families S27778 and S13938 because of relatedness > 0.2 [somalier] joining families S13899 and S13913 because of relatedness > 0.2 [somalier] joining families S13899 and S14443 because of relatedness > 0.2 [somalier] joining families S14516 and S14504 because of relatedness > 0.2 [somalier] joining families S27825 and S05945 because of relatedness > 0.2 [somalier] joining families S15259 and S15251 because of relatedness > 0.2 [somalier] joining families S05950 and S05947 because of relatedness > 0.2 [somalier] joining families S14450 and S13901 because of relatedness > 0.2 [somalier] joining families S14664 and S14663 because of relatedness > 0.2 [somalier] joining families S27808 and S27782 because of relatedness > 0.2 [somalier] joining families S27808 and S27783 because of relatedness > 0.2 [somalier] joining families S24420 and S13573 because of relatedness > 0.2 [somalier] joining families S13631 and T01215 because of relatedness > 0.2 [somalier] joining families S27793 and S27798 because of relatedness > 0.2 [somalier] joining families S16272 and S24420 because of relatedness > 0.2 [somalier] joining families S16272 and S13631 because of relatedness > 0.2 [somalier] joining families S24415 and S24414 because of relatedness > 0.2 [somalier] joining families S14486 and S14490 because of relatedness > 0.2 [somalier] joining families S11525 and S11523 because of relatedness > 0.2 [somalier] joining families S30739 and S24550 because of relatedness > 0.2 [somalier] joining families S14516 and S12809 because of relatedness > 0.2 [somalier] joining families S15263 and S15208 because of relatedness > 0.2 [somalier] joining families S12846 and S12847 because of relatedness > 0.2 [somalier] joining families S00249 and S00724 because of relatedness > 0.2 [somalier] joining families S00249 and S00819 because of relatedness > 0.2 [somalier] joining families S16582 and S27801 because of relatedness > 0.2 [somalier] joining families S13065 and S13076 because of relatedness > 0.2 [somalier] joining families S27779 and S13930 because of relatedness > 0.2 [somalier] joining families S16580 and S27808 because of relatedness > 0.2 [somalier] joining families S27776 and S20503 because of relatedness > 0.2 [somalier] joining families S27776 and S27775 because of relatedness > 0.2 [somalier] joining families S14844 and S14843 because of relatedness > 0.2 [somalier] joining families S27767 and S13122 because of relatedness > 0.2 [somalier] joining families S27767 and S27806 because of relatedness > 0.2 [somalier] joining families S13629 and S13600 because of relatedness > 0.2 [somalier] joining families S27799 and S27817 because of relatedness > 0.2 [somalier] joining families S13567 and S13568 because of relatedness > 0.2 [somalier] joining families S06065 and S06068 because of relatedness > 0.2 [somalier] joining families S06065 and S13088 because of relatedness > 0.2 [somalier] joining families S13606 and S13604 because of relatedness > 0.2 [somalier] joining families S14730 and S16272 because of relatedness > 0.2 [somalier] joining families S20495 and S14730 because of relatedness > 0.2 [somalier] joining families S13899 and S13894 because of relatedness > 0.2 [somalier] joining families S13606 and S13608 because of relatedness > 0.2 [somalier] joining families S13937 and S27779 because of relatedness > 0.2 [somalier] joining families S15607 and S15606 because of relatedness > 0.2 [somalier] joining families S10814 and S10815 because of relatedness > 0.2 [somalier] joining families S13898 and S14491 because of relatedness > 0.2 [somalier] joining families S13103 and S13105 because of relatedness > 0.2 [somalier] joining families S13103 and S13108 because of relatedness > 0.2 [somalier] joining families S13103 and S13111 because of relatedness > 0.2 [somalier] joining families S12839 and S12842 because of relatedness > 0.2 [somalier] joining families S27778 and S13937 because of relatedness > 0.2 [somalier] joining families S13065 and S13082 because of relatedness > 0.2 [somalier] joining families S15749 and S20495 because of relatedness > 0.2 [somalier] joining families S16257 and S16254 because of relatedness > 0.2 [somalier] joining families S14856 and S15604 because of relatedness > 0.2 [somalier] joining families S12918 and S14016 because of relatedness > 0.2 [somalier] joining families S15762 and S15759 because of relatedness > 0.2 [somalier] joining families S27778 and S13927 because of relatedness > 0.2 [somalier] joining families S15607 and S15609 because of relatedness > 0.2 [somalier] joining families S14508 and S14516 because of relatedness > 0.2 [somalier] joining families S13099 and S13103 because of relatedness > 0.2 [somalier] joining families S13922 and S14508 because of relatedness > 0.2 [somalier] joining families S27791 and S27827 because of relatedness > 0.2 [somalier] joining families S14776 and S09052 because of relatedness > 0.2 [somalier] joining families S14776 and S14773 because of relatedness > 0.2 [somalier] joining families S14457 and S14456 because of relatedness > 0.2 [somalier] joining families S16580 and S13065 because of relatedness > 0.2 [somalier] joining families S04497 and S15749 because of relatedness > 0.2 [somalier] joining families S14501 and S14500 because of relatedness > 0.2 [somalier] joining families S14673 and S14672 because of relatedness > 0.2 [somalier] joining families S15742 and S15740 because of relatedness > 0.2 [somalier] joining families S16266 and S04497 because of relatedness > 0.2 [somalier] joining families S14441 and S13899 because of relatedness > 0.2 [somalier] joining families S12589 and S16266 because of relatedness > 0.2 [somalier] joining families S12629 and S01041 because of relatedness > 0.2 [somalier] joining families S12769 and S12768 because of relatedness > 0.2 [somalier] joining families S13085 and S06065 because of relatedness > 0.2 [somalier] joining families S20513 and S20519 because of relatedness > 0.2 [somalier] joining families S20507 and S27776 because of relatedness > 0.2 [somalier] joining families S20507 and S12589 because of relatedness > 0.2 [somalier] joining families S24450 and S24451 because of relatedness > 0.2 [somalier] joining families S10813 and S10812 because of relatedness > 0.2 [somalier] joining families S14857 and S14856 because of relatedness > 0.2 [somalier] joining families S13613 and S13610 because of relatedness > 0.2 [somalier] joining families S13098 and S13099 because of relatedness > 0.2 [somalier] wrote groups to: somalier.groups.tsv (look at this for cancer samples) [somalier] wrote samples to: somalier.samples.tsv [somalier] wrote pair-wise relatedness metrics to: somalier.pairs.tsv