Automated Sequence Analysis Workflow
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README.md
seqr.pl

README.md

SeqR

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Automated Sequence Analysis Workflow

SeqR is software tool that automates all steps of sequence analysis in a sequential order with a one-call step. By providing all necessary options to run an analysis, SeqR simplifies the same reiterative steps taken without the wait. Set and GO!

Check out the typical reference alignment procedures using Illumina and Bowtie2 in this example.

Options

-name           Sequence/Strain name
-ref            Reference sequence file
-index          Reference index name for bowtie2
-r1             Illumina paired-end sequence reads 1
-r2             Illumina paired-end sequence reads 2
-help           Show this messag