PartitionFinder 2 is a Python program for simultaneously choosing partitioning schemes and models of molecular evolution for phylogenetic analyses of DNA, protein, and morphological data. You can PartitionFinder 2 before running a phylogenetic analysis, in order to decide how to divide up your sequence data into separate blocks before analysis, and to simultaneously perform model selection on each of those blocks.
The manual includes installation instructions, quickstart, and (very) detailed instructions.
- Enlgish: PDF is in the
- Chinese: can be viewed here, or in the
/docsfolder if you want the raw HTML