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PartitionFinder 2

PartitionFinder 2 is a Python program for simultaneously choosing partitioning schemes and models of molecular evolution for phylogenetic analyses of DNA, protein, and morphological data. You can PartitionFinder 2 before running a phylogenetic analysis, in order to decide how to divide up your sequence data into separate blocks before analysis, and to simultaneously perform model selection on each of those blocks.

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Mac/Windows/Linux

Manual

The manual includes installation instructions, quickstart, and (very) detailed instructions.

  • Enlgish: PDF is in the /docs folder.
  • Chinese: can be viewed here, or in the /docs folder if you want the raw HTML

Tutorial / walk through

www.robertlanfear.com/partitionfinder/tutorial

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PartitionFinder discovers optimal partitioning schemes for DNA sequences.

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