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  1. ergatis

    Forked from jorvis/ergatis

    Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines; I was a developer on this project at The Institute for Genomic Research/J. Craig V…


  2. JCVI_HMP_metagenomic_pipeline

    Forked from jorvis/JCVI_HMP_metagenomic_pipeline

    My CAMERA metagenomic annotation pipeline code as featured in "The JCVI standard operating procedure for annotating metagenomic shotgun sequencing data" and the "JCVI HMP metagenomic pipeline"


  3. bw-ca-tools

    A small patch for Celera Assembler to add SLURM support

    Shell 2

  4. ergatis_lite

    "Ergatis Lite" allows running Ergatis components & pipelines as simple command line tools; abandoned side project from 2007


  5. icgc-dcmwg

    Various utility scripts and ICGC DCC data specification templates / conversion tools written during early development work on the current ICGC DCC data portal (2.0)

    Perl 2 2

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January - April 2018

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