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@egonw egonw released this Jun 10, 2019 · 146 commits to master since this release

Major bugfix release for BridgeDb 2.3.2 where accidentally a problem sneaked in. Moreover, four webserver clients (CRONOS, Uniprot, PICR, and Synergizer) which seems to be broken for some time now (please let me know if you were using them) have now been removed, one had a security issue in one of its dependencies.

Binary releases and Maven instructions can be found here.

Assets 2

@egonw egonw released this May 22, 2019 · 146 commits to master since this release

DOI

Second minor release adding AOP-Wiki as data source, updates the regexp for DrugBank (add salt support), and now compiles the QC tool by default too.

Binary releases and Maven instructions can be found here.

Assets 2

@egonw egonw released this Feb 16, 2019 · 146 commits to master since this release

DOI

Very minor release adding rapeseed as a new species and IUPHAR's Guide to Pharmacology as data source.

Assets 2

@egonw egonw released this Apr 17, 2018 · 155 commits to master since this release

DOI

Major BridgeDb release, to be picked up by all downstream projects and users. The changes include an update for the PICR client, better documentation, updated Open PHACTS URIs, minor updates to various data sources, added "Brachypodium distachyon" as recognized species, removed Uniprot-SwissProt as data source (just use Uniprot-TrEMBL), and the URL of the webservice can now be changed from the command line.

Assets 2

@egonw egonw released this Sep 18, 2017 · 187 commits to master since this release

DOI

BridgeDb v2.2.2 is a minor bug fix release since v2.2.1.

Fixes:

  • recognition of the new HMDB identifiers
  • reduces the size of Ant-based distributions (with jars that support OSGi)
  • fixed the MIRIAM urn for some UniProt identifiers
Assets 2

@stain stain released this Aug 30, 2017 · 201 commits to master since this release

DOI

BridgeDb v2.2.1 is a minor bug fix release since v2.2.0.

Fixes:

The release to Maven Central mean you do no longer need to compile BridgeDb or add a <repository> to use BridgeDb JARs as a binary dependencies. The Maven build system will take care of transitive dependencies (e.g. other parts of BridgeDb that is needed)

The below examples assume you need just org.bridgedb.bio, modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>2.2.1</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '2.2.1'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="2.2.1"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:2.2.1'
Assets 2

@egonw egonw released this Aug 27, 2017 · 212 commits to master since this release

DOI

Major BridgeDb release, to be picked up by all downstream projects and users. The changes include more liberal loading of Derby files, new data sources (EPA CompTox Dashboard, BRENDA Ligands, MetaboLights), updated link out patterns, and the QC tool reports more information, including the overall identifier and mapping counts. Furthermore, it includes a considerable amount of work by the Open PHACTS projects, as detailed in a few past internal releases.

Assets 2

@stain stain released this Apr 19, 2016 · 269 commits to master since this release

Internal BridgeDB release for Open PHACTS 2.1

Also available from myGrid's Maven repository

Assets 2

@stain stain released this Dec 14, 2015 · 298 commits to master since this release

Internal BridgeDB release for Open PHACTS 2.0.

Also available from myGrid's Maven repository

Build info: http://build.mygrid.org.uk/ci/view/OpenPHACTS/job/ops-BridgeDb/59/

Assets 2

@egonw egonw released this Dec 12, 2015 · 879 commits to master since this release

Minor release that adds ChEMBL and KNApSAcK as data sources, and adds name and synonym support for the Biomart driver.

Assets 2
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