Models and general-purpose utilities for working with antibody repertoire data. abutils is a core component of the ab[x] toolkit for antibody sequence analysis.
- Source code: github.com/briney/abutils
- Documentation: abutils.readthedocs.org
- Download: pypi.python.org/pypi/abutils
- Docker: hub.docker.com/r/briney/abstar/
pip install abutils
The intended use of abutils is through the public API, enabling incorporation of abutils' methods and utilities into integrated analysis pipelines, other standalone software tools, or for interative analysis of antibody repertoires. See the abutils documentation for more detail about the API.
To run the test suite, clone or download the repository and run
pytest ./ from the top-level directory. The same tests are run after every commit using TravisCI.
All of the above dependencies can be installed with pip, and will be installed automatically when installing abstar with pip.
If you're new to Python, a great way to get started is to install the Anaconda Python distribution, which includes pip as well as a ton of useful scientific Python packages.
abutils has a few additional non-python dependencies that are not required for installation but are necessary for specific functions: