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Included an accidental change from unstable into the previous push

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1 parent b715218 commit 7e1bfd6a7cdb1c6a721ccaa84475d52f7d2b5b89 @eitanbanks eitanbanks committed Mar 5, 2013
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2 protected/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
@@ -397,7 +397,7 @@ else if (startLocationInRefForHaplotypes > haplotype.getStopPosition())
if (previousHaplotypeSeen == null) {
//no need to reallocate arrays for each new haplotype, as length won't change
- pairHMM.initialize(Y_METRIC_LENGTH, X_METRIC_LENGTH);
+ pairHMM.initialize(X_METRIC_LENGTH, Y_METRIC_LENGTH);
}
int startIndexInHaplotype = 0;

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